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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS08450 and AZOBR_RS08455 are separated by 25 nucleotides
AZOBR_RS08455 and AZOBR_RS08460 are separated by 227 nucleotides
AZOBR_RS08460 and AZOBR_RS08465 are separated by 408 nucleotides
AZOBR_RS08465 and AZOBR_RS08470 are separated by 331 nucleotides
AZOBR_RS08450: AZOBR_RS08450 - 3' 5'-cyclic-nucleotide phosphodiesterase, at 1,774,125 to 1,774,973
_RS08450
AZOBR_RS08455: AZOBR_RS08455 - diacylglycerol kinase, at 1,774,999 to 1,775,919
_RS08455
AZOBR_RS08460: AZOBR_RS08460 - enoyl-CoA hydratase, at 1,776,147 to 1,777,223
_RS08460
AZOBR_RS08465: AZOBR_RS08465 - MarR family transcriptional regulator, at 1,777,632 to 1,778,105
_RS08465
AZOBR_RS08470: AZOBR_RS08470 - amino acid ABC transporter ATP-binding protein, at 1,778,437 to 1,779,192
_RS08470
Group
Condition
AZOBR
_RS08450
AZOBR
_RS08455
AZOBR
_RS08460
AZOBR
_RS08465
AZOBR
_RS08470
motility
outer cut, LB soft agar motility assay
-0.5
-0.6
-1.9
-2.4
+0.7
stress
2-pentyl-furan 2.671 mM
-0.0
+0.0
+0.2
-1.9
-1.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.3
+0.9
-0.5
-1.6
carbon source
a-Ketoglutaric (C)
-0.2
+0.1
+0.4
-1.3
-0.6
carbon source
D-Fructose (C)
+0.2
+0.4
+0.3
-1.7
-0.6
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
+0.0
-0.1
+0.9
-2.1
-0.0
stress
Paraquat dichloride 0.04 mg/ml
+0.2
-0.6
+0.8
-0.3
-1.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-0.5
-0.1
-0.8
+1.2
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
+0.4
+0.1
+0.9
-1.4
-0.3
stress
Chlorite 1 mM
-0.3
-0.3
+1.2
-0.4
-0.5
stress
Sisomicin 0.01 mg/ml
+0.1
-0.5
+1.1
-0.2
-0.7
lb
LB
-0.3
+0.5
+1.6
-1.1
-0.8
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-0.3
+0.2
+0.8
+0.5
-1.3
anaerobic; rich media
LB; anaerobic
+0.1
+0.1
+1.0
-0.9
-0.3
stress
Cobalt chloride 0.3 mM
-0.2
-0.3
+1.5
-0.3
-0.7
nitrogen source
L-Isoleucine (N)
+0.1
+0.0
+0.1
+1.2
-1.2
stress
copper (II) chloride 2 mM
-0.2
+0.6
+0.9
-0.2
-0.8
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.4
+0.2
+1.1
-0.1
-0.7
stress
Cobalt chloride 0.2 mM
-0.5
-0.3
+1.6
-0.2
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
-0.5
+0.7
-0.2
+0.7
stress
D-Cycloserine 0.125 mg/ml
-0.8
-0.2
+2.0
-0.1
+0.3
motility
inner cut, LB soft agar motility assay
-0.1
+0.2
+1.2
+1.4
-1.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.5
+0.6
+0.3
+1.0
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.6
+0.1
+0.8
+0.4
+0.9
lb
LB
+0.1
+0.4
+1.2
-0.5
+0.5
stress
2-pentyl-furan 1.780666667 mM
+0.1
+0.2
-0.3
+1.1
+0.6
motility
inner cut, LB soft agar motility assay
+0.1
+0.3
+0.5
+1.0
+0.5
stress
Benzethonium chloride 0.003 mM
+0.3
-0.3
+2.3
-0.0
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.0
+0.4
+0.3
+2.3
stress
Paraquat dichloride 0.02 mg/ml
+0.1
+0.1
+1.6
+0.1
+1.5
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