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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS08065 and AZOBR_RS08070 are separated by 26 nucleotides
AZOBR_RS08070 and AZOBR_RS08075 are separated by 18 nucleotides
AZOBR_RS08075 and AZOBR_RS08080 overlap by 4 nucleotides
AZOBR_RS08080 and AZOBR_RS08085 are separated by 49 nucleotides
AZOBR_RS08065: AZOBR_RS08065 - urease subunit beta, at 1,701,614 to 1,701,919
_RS08065
AZOBR_RS08070: AZOBR_RS08070 - urease subunit alpha, at 1,701,946 to 1,703,655
_RS08070
AZOBR_RS08075: AZOBR_RS08075 - glutamate racemase, at 1,703,674 to 1,704,525
_RS08075
AZOBR_RS08080: AZOBR_RS08080 - urease accessory protein UreE, at 1,704,522 to 1,705,103
_RS08080
AZOBR_RS08085: AZOBR_RS08085 - urease accessory protein UreF, at 1,705,153 to 1,705,902
_RS08085
Group
Condition
AZOBR
_RS08065
AZOBR
_RS08070
AZOBR
_RS08075
AZOBR
_RS08080
AZOBR
_RS08085
nitrogen source
Urea (N)
-6.9
-2.9
-0.5
-5.6
-6.8
nitrogen source
Parabanic Acid (N)
-4.6
-3.3
-0.5
-4.2
-5.6
nitrogen source
Urea (N)
-4.4
-2.9
-0.6
-4.9
-4.6
nitrogen source
Parabanic Acid (N)
-4.7
-3.1
-0.5
-4.5
-3.6
nitrogen source
L-Citrulline (N)
-1.9
-1.5
-0.4
-1.1
-1.9
nitrogen source
L-Citrulline (N)
-1.5
-1.7
+0.0
-1.3
-1.7
stress
D-Cycloserine 0.125 mg/ml
-1.6
-0.5
-5.1
+0.1
+1.2
nitrogen source
L-Isoleucine (N)
-1.5
+0.1
+0.2
-0.0
-1.4
carbon source
D-Gluconic Acid (C)
-0.9
-0.3
-0.0
+0.4
-1.8
nitrogen source
L-Serine (N)
-0.4
+0.1
-1.8
+0.5
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.5
+0.5
-1.1
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.2
-0.9
+0.2
+0.3
-2.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
-0.9
+0.5
-0.0
-0.1
nitrogen source
L-Serine (N)
-0.1
+0.2
-1.7
+0.2
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
-0.9
+0.5
+0.4
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
-0.3
+0.9
-0.3
-0.4
stress
Benzethonium chloride 0.003 mM
+0.7
+0.3
-0.0
-0.7
-0.6
stress
3-octanone 6.3476 mM
+0.7
+0.5
-0.2
+0.3
-1.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
-0.4
-0.0
+0.3
+1.1
stress
3-octanone 6.3476 mM
+0.6
-0.5
-0.2
-0.3
+0.9
motility
outer cut, LB soft agar motility assay
+1.2
-0.3
+0.6
-0.9
+0.7
motility
inner cut, LB soft agar motility assay
+0.4
+0.6
+0.6
-0.6
+0.6
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
+0.9
+0.1
+0.8
-0.1
+0.2
motility
inner cut, LB soft agar motility assay
+0.7
+1.3
+0.4
-0.2
-0.2
stress
Chlorite 1 mM
+0.4
+0.8
+0.6
-0.3
+0.6
stress
Sisomicin 0.01 mg/ml
+1.4
-0.4
+0.8
+0.1
+0.2
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
+0.4
+0.2
+0.7
+0.1
+0.8
lb
LB
+0.3
+0.9
+0.4
+0.6
+0.4
motility
inner cut, LB soft agar motility assay
+0.5
+1.2
+0.4
+0.5
-0.0
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.9
+1.0
+0.5
+0.1
+0.3
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