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Cofit
Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS07580 and AZOBR_RS07585 are separated by 270 nucleotides
AZOBR_RS07585 and AZOBR_RS07590 are separated by 155 nucleotides
AZOBR_RS07590 and AZOBR_RS07595 are separated by 318 nucleotides
AZOBR_RS07595 and AZOBR_RS07600 are separated by 55 nucleotides
AZOBR_RS07580: AZOBR_RS07580 - membrane protein, at 1,594,646 to 1,594,870
_RS07580
AZOBR_RS07585: AZOBR_RS07585 - peroxiredoxin, at 1,595,141 to 1,595,671
_RS07585
AZOBR_RS07590: AZOBR_RS07590 - histidine ammonia-lyase, at 1,595,827 to 1,597,308
_RS07590
AZOBR_RS07595: AZOBR_RS07595 - ABC transporter ATP-binding protein, at 1,597,627 to 1,599,243
_RS07595
AZOBR_RS07600: AZOBR_RS07600 - type I secretion membrane fusion protein HlyD, at 1,599,299 to 1,600,660
_RS07600
Group
Condition
AZOBR
_RS07580
AZOBR
_RS07585
AZOBR
_RS07590
AZOBR
_RS07595
AZOBR
_RS07600
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-1.3
-3.0
+0.0
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
-0.7
-1.3
-0.1
-0.2
nitrogen source
nitrate (N)
-0.2
-0.3
-0.5
-0.5
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.9
-1.1
+0.6
-0.1
stress
2-pentyl-furan 2.671 mM
-0.0
-0.4
-0.4
+0.1
-0.7
stress
D-Cycloserine 0.125 mg/ml
-0.3
-0.2
-1.1
+0.5
-0.2
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.1
-0.3
-0.7
+0.2
-0.2
stress
Benzethonium chloride 0.003 mM
-0.3
-0.4
-0.7
+0.5
-0.3
stress
2-Furfuraldehyde 0.2 vol%
+0.2
-0.6
-0.9
+0.1
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.3
-1.3
+0.3
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.1
-1.0
+0.0
+0.2
lb
LB
-0.1
-0.8
-0.6
+0.3
+0.1
stress
nitrate 100 mM
-0.4
-0.3
-0.7
+0.3
+0.1
motility
inner cut, LB soft agar motility assay
+0.4
+0.0
-1.5
+0.5
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
-1.1
-0.4
+0.4
-0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-0.1
-0.3
-0.8
+0.3
+0.2
lb
LB
-0.1
-0.2
-0.7
+0.4
-0.2
motility
inner cut, LB soft agar motility assay
+0.3
+0.1
-1.3
+0.3
-0.1
lb
LB
-0.1
+0.3
-0.7
+0.3
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.7
-0.9
+0.5
+0.2
stress
Bacitracin 0.25 mg/ml
+0.1
-0.2
-0.9
+0.4
+0.1
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
+0.3
+0.2
-0.5
+0.3
-0.5
nitrogen source
L-Isoleucine (N)
-0.7
+0.2
+0.2
+0.3
-0.1
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.2
-0.4
+0.3
+0.3
-0.2
motility
inner cut, LB soft agar motility assay
-0.1
-0.0
-1.0
+1.0
+0.5
stress
Chlorite 1 mM
+0.5
-0.3
-0.3
+0.6
+0.0
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-0.0
-0.4
+0.5
+0.5
+0.3
carbon source
D-Gluconic Acid (C)
-0.3
+0.4
+0.6
-0.3
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.2
-0.8
+0.8
+0.5
stress
Nickel (II) chloride 0.5 mM
+0.2
+0.4
+1.8
-0.4
-0.2
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