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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS06180 and AZOBR_RS06185 are separated by 243 nucleotides
AZOBR_RS06185 and AZOBR_RS06190 are separated by 57 nucleotides
AZOBR_RS06190 and AZOBR_RS06195 are separated by 156 nucleotides
AZOBR_RS06195 and AZOBR_RS06200 are separated by 320 nucleotides
AZOBR_RS06180: AZOBR_RS06180 - flgE (modular protein), at 1,309,382 to 1,310,752
_RS06180
AZOBR_RS06185: AZOBR_RS06185 - carbonic anhydrase, at 1,310,996 to 1,311,688
_RS06185
AZOBR_RS06190: AZOBR_RS06190 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 1,311,746 to 1,312,339
_RS06190
AZOBR_RS06195: AZOBR_RS06195 - hypothetical protein, at 1,312,496 to 1,313,113
_RS06195
AZOBR_RS06200: AZOBR_RS06200 - NAD(P)H quinone oxidoreductase, at 1,313,434 to 1,314,441
_RS06200
Group
Condition
AZOBR
_RS06180
AZOBR
_RS06185
AZOBR
_RS06190
AZOBR
_RS06195
AZOBR
_RS06200
motility
outer cut, LB soft agar motility assay
+0.5
N.D.
N.D.
N.D.
-1.7
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-1.2
N.D.
N.D.
N.D.
+0.2
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
-0.3
N.D.
N.D.
N.D.
-0.6
stress
6-Pentyl-2H-pyran-2-one 0.5570485 mM
-0.3
N.D.
N.D.
N.D.
-0.5
stress
6-Pentyl-2H-pyran-2-one 0.6266795 mM
-0.3
N.D.
N.D.
N.D.
-0.5
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
-0.3
N.D.
N.D.
N.D.
-0.5
carbon source
D,L-Lactate (C)
-0.3
N.D.
N.D.
N.D.
-0.4
carbon source
L-Lactate (C)
-0.1
N.D.
N.D.
N.D.
-0.6
motility
inner cut, LB soft agar motility assay
-0.7
N.D.
N.D.
N.D.
+0.0
nitrogen source
D-Alanine (N)
-0.4
N.D.
N.D.
N.D.
-0.2
stress
3-octanone 5.2896 mM
-0.4
N.D.
N.D.
N.D.
-0.2
lb
LB
+0.2
N.D.
N.D.
N.D.
-0.5
motility
inner cut, LB soft agar motility assay
+0.2
N.D.
N.D.
N.D.
-0.4
nitrogen source
casaminos (N)
-0.4
N.D.
N.D.
N.D.
+0.2
carbon source
D,L-Lactate (C)
-0.3
N.D.
N.D.
N.D.
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
N.D.
N.D.
N.D.
+0.4
carbon source
pyruvate (C)
+0.4
N.D.
N.D.
N.D.
-0.3
stress
Benzethonium chloride 0.003 mM
+0.6
N.D.
N.D.
N.D.
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
N.D.
N.D.
N.D.
+0.7
nitrogen source
L-Glutamic (N)
-0.2
N.D.
N.D.
N.D.
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
N.D.
N.D.
N.D.
+0.6
stress
1-octen-3-ol 0.6030326667 mM
+0.2
N.D.
N.D.
N.D.
+0.3
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
-0.0
N.D.
N.D.
N.D.
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
N.D.
N.D.
N.D.
+0.1
stress
Bacitracin 0.25 mg/ml
+0.3
N.D.
N.D.
N.D.
+0.3
nitrogen source
Glucuronamide (N)
+0.1
N.D.
N.D.
N.D.
+0.5
nitrogen source
D-Alanine (N)
+0.4
N.D.
N.D.
N.D.
+0.2
nitrogen source
L-Histidine (N)
+0.4
N.D.
N.D.
N.D.
+0.2
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
+0.5
N.D.
N.D.
N.D.
+0.2
motility
inner cut, LB soft agar motility assay
+0.6
N.D.
N.D.
N.D.
+0.6
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