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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS06145 and AZOBR_RS06150 are separated by 120 nucleotides
AZOBR_RS06150 and AZOBR_RS06155 are separated by 202 nucleotides
AZOBR_RS06155 and AZOBR_RS06160 are separated by 43 nucleotides
AZOBR_RS06160 and AZOBR_RS06165 are separated by 13 nucleotides
AZOBR_RS06145: AZOBR_RS06145 - N5-carboxyaminoimidazole ribonucleotide mutase, at 1,303,788 to 1,304,297
_RS06145
AZOBR_RS06150: AZOBR_RS06150 - small protein containing a coiled-coil domain containing protein, at 1,304,418 to 1,304,618
_RS06150
AZOBR_RS06155: AZOBR_RS06155 - 6-phosphofructokinase, at 1,304,821 to 1,305,906
_RS06155
AZOBR_RS06160: AZOBR_RS06160 - hypothetical protein, at 1,305,950 to 1,306,408
_RS06160
AZOBR_RS06165: AZOBR_RS06165 - GCN5 family N-acetyltransferase, at 1,306,422 to 1,307,009
_RS06165
Group
Condition
AZOBR
_RS06145
AZOBR
_RS06150
AZOBR
_RS06155
AZOBR
_RS06160
AZOBR
_RS06165
motility
outer cut, LB soft agar motility assay
N.D.
-3.5
-0.6
+0.4
-0.9
stress
2-pentyl-furan 2.671 mM
N.D.
-1.2
-0.6
-2.5
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
+0.3
+0.1
-4.9
+0.0
stress
Paraquat dichloride 0.04 mg/ml
N.D.
-0.5
-0.4
-2.1
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.7
+0.2
-1.6
-0.3
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
N.D.
-1.5
-0.2
-0.9
+0.1
stress
3-octanone 4.2317 mM
N.D.
-1.5
-0.1
-0.6
-0.2
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
N.D.
-0.4
-1.4
-0.1
-0.3
stress
1-octen-3-ol 0.6784116667 mM
N.D.
-1.4
-0.3
-0.5
-0.0
stress
1-octen-3-ol 0.7753276667 mM
N.D.
-1.4
-0.2
-0.5
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.5
+0.2
-2.0
+0.5
carbon source
D-Gluconic Acid (C)
N.D.
-1.0
-0.4
+0.3
-0.7
stress
3-octanone 6.3476 mM
N.D.
-1.0
-0.8
-0.2
+0.2
stress
3-octanone 5.2896 mM
N.D.
-1.4
+0.2
-0.3
-0.2
stress
2-pentyl-furan 1.780666667 mM
N.D.
-1.3
+0.2
-0.5
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-1.0
+1.1
-2.0
+0.3
stress
1-octen-3-ol 0.6030326667 mM
N.D.
-1.5
+0.5
-0.6
+0.1
carbon source
Ethanol (C)
N.D.
-0.8
-0.5
+0.3
-0.5
stress
2-pentyl-furan 1.780666667 mM
N.D.
-1.3
+0.1
-0.6
+0.2
stress
3-octanone 6.3476 mM
N.D.
-0.3
+0.4
-1.1
-0.4
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
N.D.
+0.6
-0.9
-1.3
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.3
+0.5
-1.6
+0.1
stress
2-Furfuraldehyde 0.2 vol%
N.D.
-1.0
-0.6
-0.3
+0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-1.2
+0.5
+0.3
-0.6
motility
inner cut, LB soft agar motility assay
N.D.
+0.3
+0.5
-1.8
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-1.1
+1.5
-1.0
+0.7
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
N.D.
+0.7
-0.8
+0.5
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.9
+0.4
-0.7
+0.3
stress
Sisomicin 0.01 mg/ml
N.D.
-1.1
+0.5
+1.2
+0.3
nitrogen source
L-Isoleucine (N)
N.D.
+1.9
-0.6
-0.3
-0.1
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