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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS03375 and AZOBR_RS03380 are separated by 53 nucleotides
AZOBR_RS03380 and AZOBR_RS03385 are separated by 230 nucleotides
AZOBR_RS03385 and AZOBR_RS03390 are separated by 150 nucleotides
AZOBR_RS03390 and AZOBR_RS03395 are separated by 260 nucleotides
AZOBR_RS03375: AZOBR_RS03375 - NAD-dependent dehydratase, at 715,190 to 716,191
_RS03375
AZOBR_RS03380: AZOBR_RS03380 - UDP-glucose 6-dehydrogenase, at 716,245 to 717,600
_RS03380
AZOBR_RS03385: AZOBR_RS03385 - polysaccharide biosynthesis protein, at 717,831 to 719,276
_RS03385
AZOBR_RS03390: AZOBR_RS03390 - protein tyrosine kinase, at 719,427 to 721,700
_RS03390
AZOBR_RS03395: AZOBR_RS03395 - Crp/Fnr family transcriptional regulator, at 721,961 to 722,629
_RS03395
Group
Condition
AZOBR
_RS03375
AZOBR
_RS03380
AZOBR
_RS03385
AZOBR
_RS03390
AZOBR
_RS03395
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
+0.1
+0.8
-0.0
-3.4
lb
LB
-0.2
+0.1
-0.3
+0.0
-2.4
nitrogen source
L-Leucine (N)
-0.0
-0.4
+0.1
-0.2
-2.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.3
+1.1
+0.1
-3.5
stress
3-octanone 6.3476 mM
-0.1
-0.9
+0.4
-0.1
-1.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.2
+0.7
+0.5
-3.5
nitrogen source
nitrate (N)
-0.1
-0.3
+0.0
-0.1
-1.3
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
-0.2
+0.0
+0.0
-0.0
-1.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.0
+1.3
+0.6
-3.6
stress
2-pentyl-furan 1.780666667 mM
-0.1
+0.4
+0.0
-0.1
-1.7
stress
1-octen-3-ol 0.6030326667 mM
+0.1
-0.2
+0.1
+0.0
-1.3
nitrogen source
Ammonium chloride (N)
-0.1
+0.3
+0.2
-0.1
-1.5
stress
2-pentyl-furan 1.780666667 mM
-0.5
-0.3
+0.1
+0.2
-0.7
stress
nitrite 10 mM
-0.1
+0.3
-0.2
-0.1
-1.2
nitrogen source
L-Glutamic (N)
-0.1
+0.1
+0.3
+0.1
-1.5
stress
6-Pentyl-2H-pyran-2-one 0.7162051667 mM
+0.1
-0.1
+0.1
+0.1
-1.4
stress
Chlorite 1 mM
+0.0
+0.3
+0.2
+0.3
-1.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.3
+0.8
+0.1
-1.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
+0.2
+0.7
+0.1
-1.0
carbon source
D-Lactate (C)
-0.1
-0.4
-0.3
-0.2
+0.7
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
-0.4
-0.1
-0.1
-0.4
+0.7
nitrogen source
D-Alanine (N)
-0.4
-0.1
-0.4
+0.1
+0.9
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.3
+1.0
+0.5
-0.6
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-0.2
+0.1
-0.5
-0.2
+1.5
carbon source
D,L-Lactate (C)
+0.0
-0.3
+0.1
-0.2
+1.2
nitrogen source
Glucuronamide (N)
-0.2
+0.2
+0.0
-0.2
+1.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.2
+1.7
+0.6
-0.5
stress
Sisomicin 0.01 mg/ml
-0.1
+0.6
+0.1
+0.1
+1.1
carbon source
Glycerol (C)
-0.0
-0.2
+1.0
+1.5
-0.3
carbon source
Glycerol (C)
+0.0
+0.1
+0.8
+1.2
-0.3
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