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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS03360 and AZOBR_RS03365 overlap by 4 nucleotides
AZOBR_RS03365 and AZOBR_RS03370 are separated by 6 nucleotides
AZOBR_RS03370 and AZOBR_RS03375 are separated by 13 nucleotides
AZOBR_RS03375 and AZOBR_RS03380 are separated by 53 nucleotides
AZOBR_RS03360: AZOBR_RS03360 - glycosyl transferase family 1, at 711,791 to 712,921
_RS03360
AZOBR_RS03365: AZOBR_RS03365 - glycosyl transferase, at 712,918 to 714,189
_RS03365
AZOBR_RS03370: AZOBR_RS03370 - GDP-L-fucose synthase, at 714,196 to 715,176
_RS03370
AZOBR_RS03375: AZOBR_RS03375 - NAD-dependent dehydratase, at 715,190 to 716,191
_RS03375
AZOBR_RS03380: AZOBR_RS03380 - UDP-glucose 6-dehydrogenase, at 716,245 to 717,600
_RS03380
Group
Condition
AZOBR
_RS03360
AZOBR
_RS03365
AZOBR
_RS03370
AZOBR
_RS03375
AZOBR
_RS03380
motility
outer cut, LB soft agar motility assay
-0.3
-0.9
+0.0
-0.1
-0.2
motility
inner cut, LB soft agar motility assay
-0.0
-1.2
-0.3
+0.3
-0.3
stress
3-octanone 6.3476 mM
-0.3
+0.0
-0.2
-0.1
-0.9
stress
3-octanone 6.3476 mM
-0.1
-0.7
-0.1
+0.2
-0.6
nitrogen source
casaminos (N)
+0.0
-0.1
-0.4
-0.4
-0.3
stress
2-pentyl-furan 1.780666667 mM
-0.2
+0.0
-0.1
-0.5
-0.3
lb
LB
+0.0
-0.6
-0.1
-0.2
+0.1
stress
Paraquat dichloride 0.02 mg/ml
-0.4
-0.5
+0.1
+0.2
-0.2
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-0.3
-0.7
+0.2
-0.1
-0.0
stress
2-pentyl-furan 1.335528 mM
-0.4
+0.1
-0.1
-0.4
+0.1
stress
3-octanone 6.3476 mM
-0.2
+0.1
-0.3
+0.2
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.1
-0.6
-0.4
+0.3
stress
D-Cycloserine 0.125 mg/ml
-0.5
-0.3
+0.1
+0.2
-0.1
nitrogen source
L-Serine (N)
-0.2
+0.3
-0.3
-0.3
-0.1
stress
3-octanone 6.3476 mM
-0.2
-0.2
-0.3
+0.1
+0.2
motility
inner cut, LB soft agar motility assay
-0.0
-0.6
+0.3
+0.1
-0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.2
-0.1
-0.5
+0.3
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
+0.2
-0.4
-0.6
+0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
+0.0
+0.6
-0.2
-0.2
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.3
+0.4
-0.1
+0.3
stress
Sisomicin 0.01 mg/ml
+0.3
-0.3
+0.0
-0.1
+0.6
nitrogen source
L-Isoleucine (N)
+0.3
+0.4
+0.5
-0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.8
+0.5
-0.2
-0.5
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
+0.3
+0.2
+0.1
-0.0
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
+0.2
+0.4
+0.0
+0.3
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.9
+0.7
-0.3
+0.1
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.2
+0.6
+0.0
-0.2
-0.3
carbon source
D-Gluconic Acid (C)
+0.3
+0.4
+0.3
-0.1
+0.4
carbon source
Glycerol (C)
+1.3
+0.7
-0.0
-0.0
-0.2
carbon source
Glycerol (C)
+1.1
+0.8
+0.1
+0.0
+0.1
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