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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS03295 and AZOBR_RS03300 are separated by 4 nucleotides
AZOBR_RS03300 and AZOBR_RS03305 are separated by 157 nucleotides
AZOBR_RS03305 and AZOBR_RS03310 are separated by 455 nucleotides
AZOBR_RS03310 and AZOBR_RS03315 are separated by 5 nucleotides
AZOBR_RS03295: AZOBR_RS03295 - cation:proton antiporter, at 696,552 to 697,820
_RS03295
AZOBR_RS03300: AZOBR_RS03300 - GTP-binding protein YsxC, at 697,825 to 698,487
_RS03300
AZOBR_RS03305: AZOBR_RS03305 - insertase, at 698,645 to 700,384
_RS03305
AZOBR_RS03310: AZOBR_RS03310 - ribonuclease P, at 700,840 to 701,211
_RS03310
AZOBR_RS03315: AZOBR_RS03315 - 50S ribosomal protein L34, at 701,217 to 701,351
_RS03315
Group
Condition
AZOBR
_RS03295
AZOBR
_RS03300
AZOBR
_RS03305
AZOBR
_RS03310
AZOBR
_RS03315
stress
2-pentyl-furan 1.335528 mM
-0.7
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Isoleucine (N)
-0.6
N.D.
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.2 mM
-0.6
N.D.
N.D.
N.D.
N.D.
stress
1-octen-3-ol 0.6030326667 mM
-0.6
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Lysine (N)
-0.6
N.D.
N.D.
N.D.
N.D.
stress
2-pentyl-furan 1.335528 mM
-0.6
N.D.
N.D.
N.D.
N.D.
stress
3-octanone 5.2896 mM
-0.5
N.D.
N.D.
N.D.
N.D.
stress
2-pentyl-furan 1.780666667 mM
-0.5
N.D.
N.D.
N.D.
N.D.
stress
2-pentyl-furan 2.671 mM
-0.5
N.D.
N.D.
N.D.
N.D.
stress
3-octanone 5.2896 mM
-0.5
N.D.
N.D.
N.D.
N.D.
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.4
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Threonine (N)
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
D,L-Lactate (C)
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
L-Proline (C)
-0.4
N.D.
N.D.
N.D.
N.D.
nitrogen source
Urea (N)
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
L-Proline (C)
+0.4
N.D.
N.D.
N.D.
N.D.
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.4
N.D.
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.6266795 mM
+0.4
N.D.
N.D.
N.D.
N.D.
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.4
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Leucine (N)
+0.4
N.D.
N.D.
N.D.
N.D.
lb no stress control
LB no stress control
+0.4
N.D.
N.D.
N.D.
N.D.
lb no stress control
LB no stress control
+0.5
N.D.
N.D.
N.D.
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
+0.5
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.6
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Glutamic (N)
+0.6
N.D.
N.D.
N.D.
N.D.
stress
Cobalt chloride 0.3 mM
+0.6
N.D.
N.D.
N.D.
N.D.
stress
2-pentyl-furan 1.780666667 mM
+0.6
N.D.
N.D.
N.D.
N.D.
motility
outer cut, LB soft agar motility assay
+0.7
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.7
N.D.
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.8
N.D.
N.D.
N.D.
N.D.
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