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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS03125 and AZOBR_RS03130 are separated by 286 nucleotides
AZOBR_RS03130 and AZOBR_RS03135 are separated by 260 nucleotides
AZOBR_RS03135 and AZOBR_RS03140 are separated by 12 nucleotides
AZOBR_RS03140 and AZOBR_RS03145 are separated by 184 nucleotides
AZOBR_RS03125: AZOBR_RS03125 - FAD dependent oxidoreductase, at 666,305 to 667,417
_RS03125
AZOBR_RS03130: AZOBR_RS03130 - hypothetical protein, at 667,704 to 668,327
_RS03130
AZOBR_RS03135: AZOBR_RS03135 - orotidine 5'-phosphate decarboxylase, at 668,588 to 669,301
_RS03135
AZOBR_RS03140: AZOBR_RS03140 - N-(5'-phosphoribosyl)anthranilate isomerase, at 669,314 to 669,958
_RS03140
AZOBR_RS03145: AZOBR_RS03145 - diguanylate cyclase, at 670,143 to 671,018
_RS03145
Group
Condition
AZOBR
_RS03125
AZOBR
_RS03130
AZOBR
_RS03135
AZOBR
_RS03140
AZOBR
_RS03145
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
-2.0
-3.0
N.D.
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.9
-2.5
N.D.
-1.7
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
-0.3
-1.1
-1.8
N.D.
-1.0
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
+0.0
-0.8
-2.3
N.D.
-0.8
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
-0.0
-0.2
-3.1
N.D.
-0.4
nitrogen source
D-Alanine (N)
+0.0
-0.5
-2.8
N.D.
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.6
-0.4
-1.8
N.D.
-1.9
nitrogen source
casaminos (N)
+0.1
+0.5
-2.7
N.D.
-1.4
nitrogen source
L-Asparagine (N)
+0.2
-0.1
-2.9
N.D.
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-2.6
-0.6
N.D.
+0.0
nitrogen source
L-Aspartic Acid (N)
-0.5
-1.1
-1.7
N.D.
-0.1
carbon source
pyruvate (C)
-0.1
-0.3
-2.7
N.D.
-0.1
carbon source
D-Lactate (C)
+0.0
-0.2
-3.0
N.D.
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-2.0
-1.4
N.D.
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
-2.3
-0.7
N.D.
+0.5
nitrogen source
L-Glutamic (N)
-0.6
+0.1
-2.7
N.D.
+0.3
lb
LB
-0.5
-0.0
+0.7
N.D.
-3.0
carbon source
D-Gluconic Acid (C)
+0.2
+0.2
-2.9
N.D.
-0.4
nitrogen source
L-Threonine (N)
-0.1
+0.2
-2.7
N.D.
-0.3
carbon source
a-Ketoglutaric (C)
-0.2
-0.2
-1.8
N.D.
-0.5
nitrogen source
L-Isoleucine (N)
+0.2
-0.2
-2.4
N.D.
-0.1
stress
Aluminum chloride 5 mM
+0.2
+0.1
-2.5
N.D.
+0.0
nitrogen source
L-Citrulline (N)
-0.1
+0.4
-1.8
N.D.
-0.6
nitrogen source
L-Aspartic Acid (N)
-0.2
+0.4
-2.0
N.D.
-0.2
stress
Cobalt chloride 0.2 mM
-0.5
-0.6
+0.7
N.D.
-1.3
nitrogen source
L-Leucine (N)
+0.0
+0.8
-2.7
N.D.
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.5
-1.3
N.D.
+0.9
stress
3-octanone 6.3476 mM
-0.2
-0.3
-1.4
N.D.
+1.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.4
-0.9
N.D.
+1.4
motility
outer cut, LB soft agar motility assay
-1.1
+1.0
-0.1
N.D.
+0.8
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