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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS02315 and AZOBR_RS02320 are separated by 168 nucleotides
AZOBR_RS02320 and AZOBR_RS02325 are separated by 88 nucleotides
AZOBR_RS02325 and AZOBR_RS02335 are separated by 985 nucleotides
AZOBR_RS02335 and AZOBR_RS02340 are separated by 174 nucleotides
AZOBR_RS02315: AZOBR_RS02315 - ATPase AAA, at 477,514 to 479,046
_RS02315
AZOBR_RS02320: AZOBR_RS02320 - amidase, at 479,215 to 479,961
_RS02320
AZOBR_RS02325: AZOBR_RS02325 - ABC transporter substrate-binding protein, at 480,050 to 481,561
_RS02325
AZOBR_RS02335: AZOBR_RS02335 - peptide ABC transporter permease, at 482,547 to 483,407
_RS02335
AZOBR_RS02340: AZOBR_RS02340 - xanthine phosphoribosyltransferase, at 483,582 to 484,082
_RS02340
Group
Condition
AZOBR
_RS02315
AZOBR
_RS02320
AZOBR
_RS02325
AZOBR
_RS02335
AZOBR
_RS02340
nitrogen source
L-Isoleucine (N)
-0.4
-0.6
-1.3
-0.8
-2.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
+0.6
-0.2
-1.3
-3.0
stress
D-Cycloserine 0.125 mg/ml
-0.4
+0.0
+0.1
-0.7
-3.4
nitrogen source
L-Histidine (N)
-0.0
-0.0
-0.2
-0.2
-3.6
lb
LB
-0.3
-0.1
+0.1
+0.1
-3.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.4
-0.0
-0.1
-3.3
motility
inner cut, LB soft agar motility assay
-1.7
-0.1
-0.0
+1.4
-2.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.5
+0.0
-0.3
-3.0
nitrogen source
L-Phenylalanine (N)
+0.0
+0.0
-0.0
-0.1
-2.8
stress
Cobalt chloride 0.3 mM
-0.1
-0.2
+0.2
-0.3
-2.4
stress
Benzethonium chloride 0.003 mM
+0.3
+0.0
+0.0
+0.2
-3.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.4
-0.1
+0.4
-3.2
stress
Aluminum chloride 5 mM
+0.3
+0.1
-0.0
+0.2
-3.3
lb
LB
+0.1
+0.1
-0.0
-0.3
-2.6
nitrogen source
L-Threonine (N)
+0.2
+0.1
-0.2
-0.2
-2.4
lb
LB
-0.7
-0.3
-0.0
-0.0
-1.5
lb
LB
-0.3
-0.2
-0.0
+0.0
-2.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
-0.1
-0.4
+0.3
-3.1
stress
2-pentyl-furan 1.335528 mM
-0.5
+0.1
+0.1
+0.8
-2.8
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.8
+0.1
-0.0
+0.9
-2.4
stress
Chlorite 1 mM
-0.3
-0.2
+0.1
+0.2
-2.1
carbon source
D-Fructose (C)
-0.0
-0.3
+0.0
+0.3
-2.2
stress
Paraquat dichloride 0.02 mg/ml
-0.7
-0.2
+0.1
+0.3
-1.5
stress
2-pentyl-furan 1.780666667 mM
-0.8
+0.2
+0.5
+0.3
-1.9
carbon source
succinate (C)
+0.6
+0.0
+0.0
-0.0
-2.2
stress
Vancomycin 0.03 mg/ml
-0.1
-0.3
+0.2
+0.4
-1.6
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
+0.1
+0.1
+0.2
+0.3
-1.9
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-2.1
+0.4
+0.0
+0.1
+1.2
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.9
-0.1
+0.6
+0.3
-0.6
motility
outer cut, LB soft agar motility assay
+1.1
+0.3
+0.4
-0.5
+0.6
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