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Gene
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Cofit
Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS02105 and AZOBR_RS02110 are separated by 22 nucleotides
AZOBR_RS02110 and AZOBR_RS02115 are separated by 267 nucleotides
AZOBR_RS02115 and AZOBR_RS02120 are separated by 58 nucleotides
AZOBR_RS02120 and AZOBR_RS02125 are separated by 213 nucleotides
AZOBR_RS02105: AZOBR_RS02105 - hypothetical protein, at 432,122 to 432,700
_RS02105
AZOBR_RS02110: AZOBR_RS02110 - protein-PII uridylyltransferase, at 432,723 to 435,524
_RS02110
AZOBR_RS02115: AZOBR_RS02115 - hypothetical protein, at 435,792 to 436,103
_RS02115
AZOBR_RS02120: AZOBR_RS02120 - hypothetical protein, at 436,162 to 436,635
_RS02120
AZOBR_RS02125: AZOBR_RS02125 - DNA mismatch repair protein MutS, at 436,849 to 439,551
_RS02125
Group
Condition
AZOBR
_RS02105
AZOBR
_RS02110
AZOBR
_RS02115
AZOBR
_RS02120
AZOBR
_RS02125
nitrogen source
L-Glutamic (N)
-5.3
-1.0
N.D.
+0.1
-0.1
stress
Paraquat dichloride 0.02 mg/ml
-4.1
-1.0
N.D.
+0.1
-0.3
nitrogen source
nitrate (N)
+0.3
-5.3
N.D.
+0.2
-0.2
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.5
-4.0
N.D.
+0.1
-0.3
nitrogen source
D-Alanine (N)
-0.1
-4.5
N.D.
+0.3
-0.2
nitrogen source
nitrate (N)
+0.1
-4.5
N.D.
+0.1
-0.1
nitrogen source
L-Threonine (N)
-0.4
-3.6
N.D.
-0.4
+0.0
nitrogen source
L-Threonine (N)
-0.1
-4.1
N.D.
+0.0
-0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
+0.2
-4.2
N.D.
-0.2
-0.0
nitrogen source
Cytosine (N)
+0.4
-4.3
N.D.
+0.0
-0.2
nitrogen source
L-Serine (N)
-0.5
-3.7
N.D.
+0.2
-0.1
nitrogen source
D-Alanine (N)
+0.3
-4.1
N.D.
-0.0
-0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
+0.2
-3.6
N.D.
-0.3
-0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.7
-3.1
N.D.
+0.3
-0.3
nitrogen source
Parabanic Acid (N)
-0.9
-2.5
N.D.
-0.0
-0.1
nitrogen source
L-Aspartic Acid (N)
-0.4
-2.8
N.D.
+0.0
-0.2
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
+0.7
-4.1
N.D.
+0.1
-0.0
nitrogen source
Cytosine (N)
+0.5
-3.3
N.D.
-0.1
-0.0
nitrogen source
Glucuronamide (N)
-0.5
-1.9
N.D.
-0.3
-0.3
nitrogen source
L-Serine (N)
+0.5
-3.3
N.D.
-0.0
+0.1
motility
inner cut, LB soft agar motility assay
-1.1
-0.9
N.D.
-0.7
-0.1
nitrogen source
L-Phenylalanine (N)
-1.0
-1.9
N.D.
+0.2
-0.1
stress
D-Cycloserine 0.125 mg/ml
-1.9
-1.5
N.D.
+0.5
+0.3
nitrogen source
L-Phenylalanine (N)
-0.2
-2.1
N.D.
-0.1
-0.2
nitrogen source
L-Citrulline (N)
-0.2
-2.3
N.D.
+0.1
-0.2
nitrogen source
Glucuronamide (N)
-0.7
-1.9
N.D.
+0.6
-0.3
nitrogen source
L-Aspartic Acid (N)
+0.5
-2.6
N.D.
+0.2
-0.2
nitrogen source
L-Citrulline (N)
+0.3
-2.2
N.D.
+0.1
-0.2
nitrogen source
L-Histidine (N)
+1.6
-1.7
N.D.
-0.3
+0.2
stress
Paraquat dichloride 0.04 mg/ml
+1.2
-1.5
N.D.
+0.8
-0.1
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