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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS01835 and AZOBR_RS01840 are separated by 49 nucleotides
AZOBR_RS01840 and AZOBR_RS01845 overlap by 14 nucleotides
AZOBR_RS01845 and AZOBR_RS01850 are separated by 112 nucleotides
AZOBR_RS01850 and AZOBR_RS01855 are separated by 343 nucleotides
AZOBR_RS01835: AZOBR_RS01835 - DNA polymerase III subunit delta, at 373,374 to 374,396
_RS01835
AZOBR_RS01840: AZOBR_RS01840 - hypothetical protein, at 374,446 to 375,009
_RS01840
AZOBR_RS01845: AZOBR_RS01845 - leucyl-tRNA synthetase, at 374,996 to 377,566
_RS01845
AZOBR_RS01850: AZOBR_RS01850 - hypothetical protein, at 377,679 to 378,218
_RS01850
AZOBR_RS01855: AZOBR_RS01855 - major outer membrane protein OmaA, at 378,562 to 379,734
_RS01855
Group
Condition
AZOBR
_RS01835
AZOBR
_RS01840
AZOBR
_RS01845
AZOBR
_RS01850
AZOBR
_RS01855
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
N.D.
N.D.
N.D.
-4.3
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
N.D.
N.D.
N.D.
-4.3
N.D.
stress
Benzethonium chloride 0.003 mM
N.D.
N.D.
N.D.
-3.8
N.D.
stress
2-Furfuraldehyde 0.2 vol%
N.D.
N.D.
N.D.
-3.4
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
N.D.
N.D.
N.D.
-3.3
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
N.D.
N.D.
N.D.
-3.2
N.D.
stress
Vancomycin 0.03 mg/ml
N.D.
N.D.
N.D.
-3.2
N.D.
stress
copper (II) chloride 2 mM
N.D.
N.D.
N.D.
-3.1
N.D.
carbon source
a-Ketoglutaric (C)
N.D.
N.D.
N.D.
-3.0
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
N.D.
N.D.
N.D.
-2.9
N.D.
stress
D-Cycloserine 0.125 mg/ml
N.D.
N.D.
N.D.
-2.8
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
N.D.
N.D.
N.D.
-2.8
N.D.
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
N.D.
N.D.
N.D.
-2.8
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
N.D.
N.D.
N.D.
-2.8
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
N.D.
N.D.
N.D.
-2.7
N.D.
nitrogen source
Cytosine (N)
N.D.
N.D.
N.D.
-2.7
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
N.D.
N.D.
N.D.
-2.7
N.D.
carbon source
succinate (C)
N.D.
N.D.
N.D.
-2.6
N.D.
carbon source
Ethanol (C)
N.D.
N.D.
N.D.
-2.6
N.D.
stress
Bacitracin 0.25 mg/ml
N.D.
N.D.
N.D.
-2.6
N.D.
nitrogen source
Glucuronamide (N)
N.D.
N.D.
N.D.
-2.6
N.D.
stress
Paraquat dichloride 0.04 mg/ml
N.D.
N.D.
N.D.
-2.6
N.D.
carbon source
L-Lactate (C)
N.D.
N.D.
N.D.
-2.6
N.D.
carbon source
pyruvate (C)
N.D.
N.D.
N.D.
-2.5
N.D.
nitrogen source
L-Histidine (N)
N.D.
N.D.
N.D.
-2.5
N.D.
anaerobic; rich media
LB; anaerobic
N.D.
N.D.
N.D.
-2.5
N.D.
carbon source
D-Fructose (C)
N.D.
N.D.
N.D.
-2.5
N.D.
stress
3-octanone 6.3476 mM
N.D.
N.D.
N.D.
-2.4
N.D.
nitrogen source
L-Aspartic Acid (N)
N.D.
N.D.
N.D.
-2.4
N.D.
nitrogen source
D-Alanine (N)
N.D.
N.D.
N.D.
-2.3
N.D.
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