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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS01710 and AZOBR_RS01715 are separated by 242 nucleotides
AZOBR_RS01715 and AZOBR_RS01720 are separated by 217 nucleotides
AZOBR_RS01720 and AZOBR_RS01725 are separated by 140 nucleotides
AZOBR_RS01725 and AZOBR_RS01735 are separated by 3110 nucleotides
AZOBR_RS01710: AZOBR_RS01710 - translocase, at 348,824 to 349,498
_RS01710
AZOBR_RS01715: AZOBR_RS01715 - exlusion protein FxsA, at 349,741 to 350,241
_RS01715
AZOBR_RS01720: AZOBR_RS01720 - preprotein translocase subunit SecB, at 350,459 to 350,956
_RS01720
AZOBR_RS01725: AZOBR_RS01725 - transcription termination factor Rho, at 351,097 to 352,353
_RS01725
AZOBR_RS01735: AZOBR_RS01735 - death-on-curing protein, at 355,464 to 355,907
_RS01735
Group
Condition
AZOBR
_RS01710
AZOBR
_RS01715
AZOBR
_RS01720
AZOBR
_RS01725
AZOBR
_RS01735
motility
outer cut, LB soft agar motility assay
N.D.
-1.3
-5.4
N.D.
-0.3
stress
3-octanone 6.3476 mM
N.D.
-4.2
-2.2
N.D.
-0.0
stress
2-pentyl-furan 1.780666667 mM
N.D.
-4.5
-0.6
N.D.
-0.2
stress
3-octanone 5.2896 mM
N.D.
-3.3
-1.0
N.D.
-0.2
motility
inner cut, LB soft agar motility assay
N.D.
-2.7
-1.3
N.D.
+0.2
stress
3-octanone 6.3476 mM
N.D.
-1.3
-2.7
N.D.
+0.3
lb no stress control
LB no stress control
N.D.
-0.7
-2.3
N.D.
-0.2
stress
1-octen-3-ol 0.6030326667 mM
N.D.
-0.6
-2.1
N.D.
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.6266795 mM
N.D.
-0.7
-1.9
N.D.
-0.2
stress
3-octanone 5.2896 mM
N.D.
-1.2
-0.8
N.D.
-0.7
stress
3-octanone 5.2896 mM
N.D.
-0.8
-2.0
N.D.
+0.2
nitrogen source
L-Glutamic (N)
N.D.
-0.1
-2.3
N.D.
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.5570485 mM
N.D.
-1.3
-1.4
N.D.
+0.1
stress
1-octen-3-ol 0.7753276667 mM
N.D.
-0.1
-1.9
N.D.
-0.5
stress
2-pentyl-furan 1.335528 mM
N.D.
+0.4
-2.4
N.D.
-0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
N.D.
-1.5
+0.3
N.D.
-0.7
lb no stress control
LB no stress control
N.D.
+0.3
-2.0
N.D.
-0.2
dmso control
DMSO control
N.D.
+0.6
-2.0
N.D.
-0.2
stress
2-pentyl-furan 1.335528 mM
N.D.
+0.5
-1.9
N.D.
+0.1
stress
Paraquat dichloride 0.02 mg/ml
N.D.
-2.2
+1.7
N.D.
-0.1
stress
Paraquat dichloride 0.04 mg/ml
N.D.
-2.7
+2.0
N.D.
+0.6
stress
Benzethonium chloride 0.003 mM
N.D.
-1.2
+1.4
N.D.
-0.2
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
N.D.
+1.4
-1.1
N.D.
-0.3
lb
LB
N.D.
-0.7
+1.8
N.D.
-0.1
stress
Sisomicin 0.01 mg/ml
N.D.
-0.7
+1.5
N.D.
+1.0
stress
Chlorite 1 mM
N.D.
-0.8
+1.8
N.D.
+0.8
stress
Cobalt chloride 0.2 mM
N.D.
+0.1
+1.8
N.D.
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.9
+0.9
N.D.
+0.8
stress
D-Cycloserine 0.125 mg/ml
N.D.
+1.2
+1.8
N.D.
+0.4
lb
LB
N.D.
+1.1
+1.7
N.D.
+0.6
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