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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS01350 and AZOBR_RS01355 are separated by 229 nucleotides
AZOBR_RS01355 and AZOBR_RS01360 are separated by 65 nucleotides
AZOBR_RS01360 and AZOBR_RS01365 are separated by 0 nucleotides
AZOBR_RS01365 and AZOBR_RS01370 are separated by 125 nucleotides
AZOBR_RS01350: AZOBR_RS01350 - 2-nitropropane dioxygenase, at 280,111 to 281,508
_RS01350
AZOBR_RS01355: AZOBR_RS01355 - glycerophosphoryl diester phosphodiesterase, at 281,738 to 282,487
_RS01355
AZOBR_RS01360: AZOBR_RS01360 - lysine 2 3-aminomutase, at 282,553 to 283,587
_RS01360
AZOBR_RS01365: AZOBR_RS01365 - membrane protein, at 283,588 to 284,142
_RS01365
AZOBR_RS01370: AZOBR_RS01370 - metallopeptidase, at 284,268 to 285,161
_RS01370
Group
Condition
AZOBR
_RS01350
AZOBR
_RS01355
AZOBR
_RS01360
AZOBR
_RS01365
AZOBR
_RS01370
stress
3-octanone 6.3476 mM
N.D.
-1.9
-3.5
+0.2
-0.0
stress
Benzethonium chloride 0.003 mM
N.D.
+0.3
-4.9
-0.3
+0.2
stress
copper (II) chloride 2 mM
N.D.
-0.6
-3.9
-0.1
+0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
N.D.
-1.6
-2.0
+0.0
-0.3
motility
inner cut, LB soft agar motility assay
N.D.
-1.7
-2.1
-0.0
-0.0
stress
3-octanone 5.2896 mM
N.D.
-0.8
-3.0
-0.1
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-1.3
-2.2
-0.3
+0.0
stress
3-octanone 4.2317 mM
N.D.
-0.9
-2.8
+0.1
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.8
-2.1
-0.3
-0.2
carbon source
L-Leucine (C)
N.D.
-0.4
-3.1
+0.0
+0.1
stress
2-pentyl-furan 1.780666667 mM
N.D.
-1.0
-2.5
+0.1
+0.1
stress
2-pentyl-furan 1.335528 mM
N.D.
-0.7
-2.6
+0.1
+0.2
stress
1-octen-3-ol 0.6784116667 mM
N.D.
-0.8
-2.2
+0.1
+0.0
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
N.D.
-1.2
-2.2
+0.4
+0.1
stress
3-octanone 4.2317 mM
N.D.
-1.0
-2.1
+0.1
+0.1
stress
Paraquat dichloride 0.04 mg/ml
N.D.
-0.8
-2.0
-0.1
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.6
-2.9
-0.4
-0.0
stress
2-pentyl-furan 1.780666667 mM
N.D.
+0.8
-3.4
-0.1
-0.0
stress
1-octen-3-ol 0.6784116667 mM
N.D.
-0.2
-2.6
+0.2
-0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
N.D.
-0.6
-2.0
+0.2
-0.2
stress
2-pentyl-furan 1.335528 mM
N.D.
+0.0
-2.8
+0.3
+0.2
stress
2-pentyl-furan 1.780666667 mM
N.D.
+0.4
-2.7
-0.0
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.5
-2.6
-0.5
+0.3
stress
Aluminum chloride 5 mM
N.D.
+0.3
-2.6
-0.1
+0.2
stress
3-octanone 6.3476 mM
N.D.
-0.2
-2.4
+0.2
+0.2
motility
inner cut, LB soft agar motility assay
N.D.
+0.4
-2.6
-0.2
+0.3
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
N.D.
-0.2
-2.2
+0.5
-0.1
stress
2-pentyl-furan 2.671 mM
N.D.
+1.1
-2.9
-0.3
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+1.0
-2.6
-0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.7
-1.9
-0.2
+0.1
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