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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS01315 and AZOBR_RS01320 are separated by 58 nucleotides
AZOBR_RS01320 and AZOBR_RS01325 are separated by 22 nucleotides
AZOBR_RS01325 and AZOBR_RS01330 are separated by 230 nucleotides
AZOBR_RS01330 and AZOBR_RS01335 are separated by 84 nucleotides
AZOBR_RS01315: AZOBR_RS01315 - GCN5 family N-acetyltransferase, at 273,136 to 275,820
_RS01315
AZOBR_RS01320: AZOBR_RS01320 - hypothetical protein, at 275,879 to 276,451
_RS01320
AZOBR_RS01325: AZOBR_RS01325 - 2-hydroxyacid dehydrogenase, at 276,474 to 277,463
_RS01325
AZOBR_RS01330: AZOBR_RS01330 - hypothetical protein, at 277,694 to 278,248
_RS01330
AZOBR_RS01335: AZOBR_RS01335 - hypothetical protein, at 278,333 to 278,926
_RS01335
Group
Condition
AZOBR
_RS01315
AZOBR
_RS01320
AZOBR
_RS01325
AZOBR
_RS01330
AZOBR
_RS01335
stress
Sisomicin 0.01 mg/ml
+0.0
-5.3
+0.1
N.D.
+0.5
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-1.8
-1.0
-1.7
N.D.
+0.2
carbon source
D-Gluconic Acid (C)
-0.9
-1.4
-0.7
N.D.
-1.0
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
-1.8
-0.3
-1.0
N.D.
+0.1
lb
LB
-0.0
-2.7
-0.6
N.D.
+0.2
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-1.5
+0.2
-1.4
N.D.
-0.2
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-1.7
-0.3
-1.1
N.D.
+0.3
nitrogen source
L-Asparagine (N)
+0.0
-2.3
+0.0
N.D.
-0.3
motility
inner cut, LB soft agar motility assay
-0.2
-1.5
-0.6
N.D.
-0.2
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-1.8
+0.1
-1.0
N.D.
+0.3
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-1.5
+0.1
-1.1
N.D.
+0.3
nitrogen source
D-Alanine (N)
-0.3
-0.5
-1.3
N.D.
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.6
-2.2
N.D.
+0.4
motility
inner cut, LB soft agar motility assay
+0.2
-2.6
+0.4
N.D.
+0.0
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-1.5
+0.2
-0.6
N.D.
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
-0.7
-2.0
N.D.
+0.4
nitrogen source
L-Isoleucine (N)
-0.7
+0.5
-1.0
N.D.
-0.5
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-1.9
+0.8
-0.7
N.D.
+0.1
motility
inner cut, LB soft agar motility assay
-0.6
-2.1
-0.1
N.D.
+1.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-1.5
+0.2
-0.3
N.D.
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.7
+0.7
-2.8
N.D.
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
+1.1
-2.2
N.D.
-0.5
nitrogen source
L-Threonine (N)
+0.1
-1.8
+0.5
N.D.
+0.1
stress
Paraquat dichloride 0.04 mg/ml
+0.2
-1.3
+0.4
N.D.
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
-2.4
+1.1
N.D.
+0.1
stress
2-pentyl-furan 2.671 mM
+0.3
-1.0
+0.7
N.D.
-0.3
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
-0.3
+0.7
-0.8
N.D.
+0.5
nitrogen source
L-Glutamic (N)
+0.2
+1.6
-0.7
N.D.
-0.4
stress
3-octanone 6.3476 mM
-0.5
+1.0
+0.2
N.D.
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+1.3
-0.1
N.D.
+0.5
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