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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS01300 and AZOBR_RS01305 are separated by 148 nucleotides
AZOBR_RS01305 and AZOBR_RS01310 are separated by 93 nucleotides
AZOBR_RS01310 and AZOBR_RS01315 are separated by 299 nucleotides
AZOBR_RS01315 and AZOBR_RS01320 are separated by 58 nucleotides
AZOBR_RS01300: AZOBR_RS01300 - peptide ABC transporter substrate-binding protein, at 269,287 to 271,095
_RS01300
AZOBR_RS01305: AZOBR_RS01305 - inorganic pyrophosphatase, at 271,244 to 271,801
_RS01305
AZOBR_RS01310: AZOBR_RS01310 - lactate dehydrogenase, at 271,895 to 272,836
_RS01310
AZOBR_RS01315: AZOBR_RS01315 - GCN5 family N-acetyltransferase, at 273,136 to 275,820
_RS01315
AZOBR_RS01320: AZOBR_RS01320 - hypothetical protein, at 275,879 to 276,451
_RS01320
Group
Condition
AZOBR
_RS01300
AZOBR
_RS01305
AZOBR
_RS01310
AZOBR
_RS01315
AZOBR
_RS01320
stress
Sisomicin 0.01 mg/ml
+0.0
N.D.
-5.1
+0.0
-5.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
N.D.
-3.0
-0.0
-0.7
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.0
N.D.
-1.5
-0.4
-1.2
lb
LB
+0.0
N.D.
-0.2
-0.0
-2.7
carbon source
D-Gluconic Acid (C)
-0.2
N.D.
-0.1
-0.9
-1.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
N.D.
-2.7
+0.5
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
N.D.
-4.4
+0.2
+1.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
N.D.
-0.1
+0.4
-2.4
motility
inner cut, LB soft agar motility assay
+0.0
N.D.
+0.4
-0.6
-2.1
nitrogen source
L-Asparagine (N)
+0.0
N.D.
+0.0
+0.0
-2.3
motility
inner cut, LB soft agar motility assay
-0.4
N.D.
+0.8
+0.2
-2.6
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
+0.0
N.D.
+0.9
-1.8
-1.0
stress
2-pentyl-furan 2.671 mM
-0.1
N.D.
-0.8
+0.3
-1.0
nitrogen source
L-Threonine (N)
-0.1
N.D.
+0.6
+0.1
-1.8
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
+0.2
N.D.
+1.1
-1.8
-0.3
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
+0.2
N.D.
+0.8
-1.8
+0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
+0.1
N.D.
+0.6
-1.5
+0.2
motility
inner cut, LB soft agar motility assay
+0.1
N.D.
+1.0
-0.2
-1.5
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
+0.1
N.D.
+0.7
-1.5
+0.2
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.2
N.D.
+1.2
-1.7
-0.3
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
+0.3
N.D.
+0.7
-1.5
+0.2
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.1
N.D.
+1.0
-1.9
+0.8
stress
3-octanone 6.3476 mM
+0.1
N.D.
-0.5
-0.5
+1.0
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
+0.3
N.D.
+1.6
-1.5
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
N.D.
+1.3
+0.2
-0.6
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
+0.1
N.D.
+1.5
-1.0
+0.2
anaerobic; rich media
LB; anaerobic
+0.0
N.D.
+1.2
-0.6
+0.4
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
+0.3
N.D.
+1.4
-0.3
+0.7
nitrogen source
L-Glutamic (N)
-0.0
N.D.
+0.4
+0.2
+1.6
stress
D-Cycloserine 0.125 mg/ml
+0.1
N.D.
+1.0
+0.6
+0.5
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