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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS00775 and AZOBR_RS00780 are separated by 220 nucleotides
AZOBR_RS00780 and AZOBR_RS00785 are separated by 87 nucleotides
AZOBR_RS00785 and AZOBR_RS00790 are separated by 280 nucleotides
AZOBR_RS00790 and AZOBR_RS00795 overlap by 1 nucleotides
AZOBR_RS00775: AZOBR_RS00775 - glyoxalase, at 151,260 to 151,694
_RS00775
AZOBR_RS00780: AZOBR_RS00780 - putative methyl-accepting chemotaxis protein, at 151,915 to 153,585
_RS00780
AZOBR_RS00785: AZOBR_RS00785 - argininosuccinate synthase, at 153,673 to 154,908
_RS00785
AZOBR_RS00790: AZOBR_RS00790 - hypothetical protein, at 155,189 to 155,500
_RS00790
AZOBR_RS00795: AZOBR_RS00795 - hypothetical protein, at 155,500 to 155,736
_RS00795
Group
Condition
AZOBR
_RS00775
AZOBR
_RS00780
AZOBR
_RS00785
AZOBR
_RS00790
AZOBR
_RS00795
stress
Benzethonium chloride 0.003 mM
-0.4
-0.2
N.D.
-0.9
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.3
-0.4
N.D.
-0.2
N.D.
nitrogen source
L-Asparagine (N)
-0.2
-0.2
N.D.
-0.5
N.D.
nitrogen source
L-Threonine (N)
-0.2
+0.0
N.D.
-0.6
N.D.
carbon source
D-Gluconic Acid (C)
+0.1
-0.4
N.D.
-0.4
N.D.
stress
2-Furfuraldehyde 0.2 vol%
-0.6
+0.1
N.D.
-0.2
N.D.
stress
2-pentyl-furan 1.335528 mM
-0.3
+0.1
N.D.
-0.4
N.D.
nitrogen source
casaminos (N)
-0.5
-0.2
N.D.
+0.1
N.D.
motility
inner cut, LB soft agar motility assay
-0.5
-0.4
N.D.
+0.3
N.D.
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.3
+0.3
N.D.
-0.3
N.D.
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.3
+0.5
N.D.
-0.3
N.D.
stress
Paraquat dichloride 0.04 mg/ml
-0.1
-0.4
N.D.
+0.5
N.D.
stress
D-Cycloserine 0.125 mg/ml
+0.4
+0.3
N.D.
-0.4
N.D.
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.0
+0.6
N.D.
-0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.4
N.D.
+0.6
N.D.
nitrogen source
L-Isoleucine (N)
+0.6
-0.2
N.D.
+0.1
N.D.
motility
outer cut, LB soft agar motility assay
+0.3
-0.2
N.D.
+0.5
N.D.
carbon source
a-Ketoglutaric (C)
-0.1
-0.1
N.D.
+0.8
N.D.
stress
2-pentyl-furan 2.671 mM
+0.4
+0.4
N.D.
-0.1
N.D.
motility
inner cut, LB soft agar motility assay
-0.2
-0.0
N.D.
+0.9
N.D.
motility
inner cut, LB soft agar motility assay
+0.5
+0.1
N.D.
+0.2
N.D.
stress
Aluminum chloride 5 mM
+0.4
+0.4
N.D.
+0.1
N.D.
stress
copper (II) chloride 2 mM
+0.3
+0.2
N.D.
+0.3
N.D.
stress
Sisomicin 0.01 mg/ml
+0.2
+0.0
N.D.
+0.6
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.0
N.D.
+0.7
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.8
N.D.
+0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+0.3
N.D.
+0.9
N.D.
carbon source
a-Ketoglutaric (C)
+0.2
+0.0
N.D.
+0.7
N.D.
stress
Chlorite 1 mM
+0.3
+0.3
N.D.
+0.3
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.9
-0.1
N.D.
+0.3
N.D.
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