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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS00215 and AZOBR_RS00220 are separated by 81 nucleotides
AZOBR_RS00220 and AZOBR_RS00225 are separated by 121 nucleotides
AZOBR_RS00225 and AZOBR_RS00230 are separated by 234 nucleotides
AZOBR_RS00230 and AZOBR_RS00235 are separated by 127 nucleotides
AZOBR_RS00215: AZOBR_RS00215 - MFS transporter, at 35,788 to 37,098
_RS00215
AZOBR_RS00220: AZOBR_RS00220 - hypothetical protein, at 37,180 to 37,431
_RS00220
AZOBR_RS00225: AZOBR_RS00225 - purine biosynthesis protein purH, at 37,553 to 39,157
_RS00225
AZOBR_RS00230: AZOBR_RS00230 - hypothetical protein, at 39,392 to 41,044
_RS00230
AZOBR_RS00235: AZOBR_RS00235 - MFS transporter, at 41,172 to 42,488
_RS00235
Group
Condition
AZOBR
_RS00215
AZOBR
_RS00220
AZOBR
_RS00225
AZOBR
_RS00230
AZOBR
_RS00235
stress
3-octanone 6.3476 mM
+0.1
N.D.
N.D.
N.D.
-1.4
stress
6-Pentyl-2H-pyran-2-one 0.5570485 mM
-0.5
N.D.
N.D.
N.D.
-0.3
stress
3-octanone 6.3476 mM
+0.1
N.D.
N.D.
N.D.
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.7
N.D.
N.D.
N.D.
+0.2
stress
3-octanone 5.2896 mM
+0.1
N.D.
N.D.
N.D.
-0.6
motility
inner cut, LB soft agar motility assay
-0.6
N.D.
N.D.
N.D.
+0.1
stress
1-octen-3-ol 0.6030326667 mM
+0.2
N.D.
N.D.
N.D.
-0.5
stress
3-octanone 6.3476 mM
+0.3
N.D.
N.D.
N.D.
-0.5
lb
LB
-0.6
N.D.
N.D.
N.D.
+0.4
motility
outer cut, LB soft agar motility assay
+0.5
N.D.
N.D.
N.D.
-0.7
carbon source
D-Gluconic Acid (C)
+0.6
N.D.
N.D.
N.D.
-0.6
stress
2-pentyl-furan 1.780666667 mM
+0.5
N.D.
N.D.
N.D.
-0.5
stress
Cobalt chloride 0.2 mM
-0.4
N.D.
N.D.
N.D.
+0.6
carbon source
D,L-Lactate (C)
+0.7
N.D.
N.D.
N.D.
-0.3
nitrogen source
D-Alanine (N)
+0.6
N.D.
N.D.
N.D.
-0.2
stress
Cobalt chloride 0.3 mM
-0.0
N.D.
N.D.
N.D.
+0.7
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.6
N.D.
N.D.
N.D.
+0.1
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
+0.3
N.D.
N.D.
N.D.
+0.5
carbon source
L-Lactate (C)
+0.6
N.D.
N.D.
N.D.
+0.2
motility
inner cut, LB soft agar motility assay
+0.6
N.D.
N.D.
N.D.
+0.2
stress
Bacitracin 0.25 mg/ml
+0.1
N.D.
N.D.
N.D.
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
N.D.
N.D.
N.D.
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.8
N.D.
N.D.
N.D.
+0.1
carbon source
D,L-Lactate (C)
+0.6
N.D.
N.D.
N.D.
+0.3
nitrogen source
L-Histidine (N)
+0.1
N.D.
N.D.
N.D.
+0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
N.D.
N.D.
N.D.
+0.8
nitrogen source
L-Isoleucine (N)
+0.8
N.D.
N.D.
N.D.
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.8
N.D.
N.D.
N.D.
+0.3
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
+0.6
N.D.
N.D.
N.D.
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
N.D.
N.D.
N.D.
+1.1
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