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Cofit
Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS00075 and AZOBR_RS00080 are separated by 314 nucleotides
AZOBR_RS00080 and AZOBR_RS00085 are separated by 290 nucleotides
AZOBR_RS00085 and AZOBR_RS00090 are separated by 161 nucleotides
AZOBR_RS00090 and AZOBR_RS00095 are separated by 141 nucleotides
AZOBR_RS00075: AZOBR_RS00075 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 3,825 to 5,162
_RS00075
AZOBR_RS00080: AZOBR_RS00080 - hypothetical protein, at 5,477 to 5,824
_RS00080
AZOBR_RS00085: AZOBR_RS00085 - histidine kinase, at 6,115 to 7,206
_RS00085
AZOBR_RS00090: AZOBR_RS00090 - hypothetical protein, at 7,368 to 8,156
_RS00090
AZOBR_RS00095: AZOBR_RS00095 - MFS transporter permease, at 8,298 to 9,482
_RS00095
Group
Condition
AZOBR
_RS00075
AZOBR
_RS00080
AZOBR
_RS00085
AZOBR
_RS00090
AZOBR
_RS00095
nitrogen source
L-Glutamic (N)
+0.4
-1.5
N.D.
-1.2
-0.3
stress
Benzethonium chloride 0.003 mM
-0.4
-0.5
N.D.
-0.2
-0.3
stress
2-pentyl-furan 2.671 mM
-0.2
-0.5
N.D.
-0.4
-0.1
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
+0.1
+0.0
N.D.
-0.5
-0.3
motility
inner cut, LB soft agar motility assay
-0.2
-0.3
N.D.
+0.4
-0.5
nitrogen source
Glucuronamide (N)
+0.1
-0.2
N.D.
-0.6
+0.2
carbon source
D-Gluconic Acid (C)
+0.1
-0.7
N.D.
-0.0
+0.2
motility
outer cut, LB soft agar motility assay
+0.1
-0.4
N.D.
-0.2
+0.2
nitrogen source
L-Histidine (N)
-0.2
+0.4
N.D.
-0.2
-0.4
stress
3-octanone 6.3476 mM
-0.0
+0.2
N.D.
-0.6
+0.2
nitrogen source
casaminos (N)
+0.2
-0.4
N.D.
+0.4
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
+0.4
N.D.
-0.6
+0.0
stress
2-pentyl-furan 1.780666667 mM
+0.1
-0.9
N.D.
+0.2
+0.5
stress
2-Furfuraldehyde 0.2 vol%
-0.2
-0.4
N.D.
+0.4
+0.1
lb
LB
+0.4
-0.7
N.D.
+0.3
+0.1
lb
LB
-0.2
-0.4
N.D.
+0.5
+0.1
nitrogen source
L-Threonine (N)
-0.2
+0.4
N.D.
-0.4
+0.3
stress
2-pentyl-furan 1.780666667 mM
-0.0
+0.6
N.D.
+0.3
-0.4
motility
inner cut, LB soft agar motility assay
+0.0
+0.3
N.D.
+0.4
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.1
N.D.
-0.5
+0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.1
N.D.
+0.9
+0.1
stress
D-Cycloserine 0.125 mg/ml
-0.0
+0.2
N.D.
+0.1
+0.7
nitrogen source
nitrate (N)
+0.4
+0.3
N.D.
+0.0
+0.3
stress
Cobalt chloride 0.2 mM
-0.0
+0.3
N.D.
+0.3
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
+0.6
N.D.
+0.1
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.4
N.D.
+0.8
-0.1
anaerobic; rich media
LB; anaerobic
+0.1
+0.2
N.D.
+0.3
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.4
N.D.
+0.3
+0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.3
N.D.
+0.6
+0.5
carbon source
succinate (C)
+0.3
+0.1
N.D.
+0.4
+0.3
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