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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS00050 and AZOBR_RS00055 are separated by 86 nucleotides
AZOBR_RS00055 and AZOBR_RS00060 are separated by 18 nucleotides
AZOBR_RS00060 and AZOBR_RS00065 are separated by 3 nucleotides
AZOBR_RS00065 and AZOBR_RS00070 are separated by 38 nucleotides
AZOBR_RS00050: AZOBR_RS00050 - transposase, at 79 to 471
_RS00050
AZOBR_RS00055: AZOBR_RS00055 - transposase, at 558 to 836
_RS00055
AZOBR_RS00060: AZOBR_RS00060 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein, at 855 to 1,928
_RS00060
AZOBR_RS00065: AZOBR_RS00065 - glycerol-3-phosphate transporter membrane protein, at 1,932 to 2,762
_RS00065
AZOBR_RS00070: AZOBR_RS00070 - glycerol-3-phosphate transporter permease, at 2,801 to 3,685
_RS00070
Group
Condition
AZOBR
_RS00050
AZOBR
_RS00055
AZOBR
_RS00060
AZOBR
_RS00065
AZOBR
_RS00070
nitrogen source
L-Isoleucine (N)
-4.1
+0.6
+0.4
+0.0
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.6
-0.7
+0.3
-0.3
-0.6
stress
2-pentyl-furan 1.335528 mM
-2.1
-0.2
+0.1
-0.4
+0.2
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-2.5
+0.3
+0.1
-0.1
+0.1
motility
outer cut, LB soft agar motility assay
-3.2
+0.7
+0.1
+0.0
+0.2
stress
6-Pentyl-2H-pyran-2-one 0.5570485 mM
-2.1
+0.1
+0.0
-0.1
+0.1
stress
6-Pentyl-2H-pyran-2-one 0.5570485 mM
-1.5
-0.2
+0.0
-0.1
-0.0
stress
2-pentyl-furan 2.671 mM
-0.7
-0.5
+0.0
-0.2
-0.3
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-1.1
+0.0
-0.1
-0.2
-0.4
stress
2-pentyl-furan 1.335528 mM
-0.5
-0.8
-0.2
-0.2
+0.2
carbon source
Glycerol (C)
-0.8
-0.7
+0.4
+0.1
+0.2
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-1.3
+0.4
-0.1
+0.3
+0.1
stress
Sisomicin 0.01 mg/ml
-0.5
+0.5
-0.1
-0.5
+0.5
motility
inner cut, LB soft agar motility assay
-0.9
+0.3
-0.2
+0.1
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.0
-0.3
-0.1
+0.1
-0.4
stress
2-pentyl-furan 1.780666667 mM
+0.9
-0.1
+0.0
-0.5
+0.3
nitrogen source
L-Lysine (N)
+0.8
+0.5
+0.0
-0.1
-0.5
stress
2-pentyl-furan 1.780666667 mM
+1.4
-0.3
-0.2
+0.0
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.6
-0.1
+0.1
+0.3
-0.7
stress
Benzethonium chloride 0.003 mM
+1.2
+0.4
-0.2
-0.1
+0.0
stress
benzoic 0.145 mg/ml
+1.1
+0.7
-0.2
-0.0
-0.1
lb
LB
+1.2
+0.3
-0.3
+0.1
+0.2
stress
Paraquat dichloride 0.02 mg/ml
+1.0
+0.3
+0.1
-0.1
+0.3
stress
2-Furfuraldehyde 0.2 vol%
+1.0
+0.8
+0.2
-0.1
-0.2
carbon source
D-Fructose (C)
+0.9
+0.4
-0.0
+0.2
+0.3
stress
Chlorite 1 mM
+1.3
+0.7
-0.2
+0.0
-0.1
nitrogen source
L-Threonine (N)
+0.7
+0.9
+0.0
-0.0
+0.1
stress
Aluminum chloride 5 mM
+1.6
+0.6
-0.1
+0.2
+0.1
lb
LB
+1.3
+0.8
+0.1
+0.3
+0.1
motility
inner cut, LB soft agar motility assay
+2.3
+1.0
-0.1
-0.1
+0.3
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