Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_30415 and AO356_30420 overlap by 4 nucleotidesAO356_30420 and AO356_30425 overlap by 29 nucleotidesAO356_30425 and AO356_30430 are separated by 410 nucleotidesAO356_30430 and AO356_30435 are separated by 119 nucleotides AO356_30415: AO356_30415 - pyrroloquinoline quinone biosynthesis protein PqqC, at 7,101,362 to 7,102,114 _30415 AO356_30420: AO356_30420 - pyrroloquinoline quinone biosynthesis protein PqqD, at 7,102,111 to 7,102,386 _30420 AO356_30425: AO356_30425 - pyrroloquinoline quinone biosynthesis protein PqqE, at 7,102,358 to 7,103,527 _30425 AO356_30430: AO356_30430 - hypothetical protein, at 7,103,938 to 7,104,333 _30430 AO356_30435: AO356_30435 - multidrug transporter, at 7,104,453 to 7,105,877 _30435
Group Condition AO356_30415 AO356_30420 AO356_30425 AO356_30430 AO356_30435
stress 1-ethyl-3-methylimidazolium chloride 200 mM -0.7 N.D. -0.5 -1.5 +0.0
motility outer cut, LB soft agar motility assay -2.0 N.D. -0.2 +0.0 +0.1
carbon source D-Sorbitol (C) -0.5 N.D. -0.8 -0.5 -0.2
pH Minimal media pH8 -1.0 N.D. +0.0 -0.9 -0.0
stress Lomefloxacin 0.0005 mM -0.4 N.D. -0.9 -0.4 -0.1
motility outer cut, LB soft agar motility assay -0.6 N.D. +0.1 -0.8 -0.3
carbon source D-Trehalose (C) -0.4 N.D. -0.0 -1.1 -0.2
stress Nickel (II) chloride 0.625 mM -0.2 N.D. -0.5 -0.8 -0.2
anaerobic Nitrate reduction with yeast extract -0.8 N.D. -1.1 +0.6 -0.3
stress copper (II) chloride 2.5 mM -0.9 N.D. -0.4 +0.1 -0.3
nitrogen source Urea (N) -0.1 N.D. -0.2 -1.1 -0.1
nitrogen source L-tyrosine (N) -0.4 N.D. -0.8 -0.3 -0.0
carbon source L-Arginine (C) -0.4 N.D. +0.3 -1.0 -0.1
phage P5ss-5 phage 10-1 dilution SM calcl2 -0.6 N.D. -0.8 +0.1 +0.1
stress Paraquat dichloride 0.0625 mg/ml +0.3 N.D. -0.6 -0.8 -0.1
nitrogen source Gly-Glu (N) -0.6 N.D. +0.1 -0.5 -0.1
stress 1-ethyl-3-methylimidazolium acetate 20 mM -0.0 N.D. +0.2 -1.2 -0.1
carbon source Ethanol (C) -0.5 N.D. +0.2 -0.5 -0.2
pH Minimal media pH9 -0.8 N.D. -0.5 +0.4 -0.1
carbon source Tween 20 (C) -1.0 N.D. +0.0 +0.2 -0.2
motility outer cut, LB soft agar motility assay +0.6 N.D. -0.7 -0.5 -0.1
carbon source Carbon source D-Glucose 10 mM +0.8 N.D. -1.1 -0.3 -0.0
carbon source D-Alanine (C) -0.6 N.D. +0.4 -0.4 -0.0
carbon source Carbon source D,L-Lactate 10 mM +0.3 N.D. -0.7 -0.3 +0.1
stress nitrite 10 mM +0.0 N.D. +0.6 -0.7 -0.2
nitrogen source Cytosine (N) +0.3 N.D. +0.3 -0.7 -0.2
stress Benzalkonium Chloride 0.016 mg/ml +0.3 N.D. -0.4 -0.4 +0.3
stress Sisomicin 0.001 mg/ml +0.4 N.D. +0.3 -0.5 -0.2
stress KB-half, Pseudo5 supernatant +1.0 N.D. -0.1 +1.5 -0.0
stress KB-half, Pseudo11 supernatant, 100 uM FeCl3 +1.0 N.D. +0.5 +1.6 -0.1
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