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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_30355 and AO356_30360 are separated by 63 nucleotides
AO356_30360 and AO356_30365 are separated by 49 nucleotides
AO356_30365 and AO356_30370 are separated by 68 nucleotides
AO356_30370 and AO356_30375 are separated by 500 nucleotides
AO356_30355: AO356_30355 - enoyl-CoA hydratase, at 7,085,525 to 7,086,319
_30355
AO356_30360: AO356_30360 - 3-hydroxypropionyl-CoA dehydratase, at 7,086,383 to 7,087,120
_30360
AO356_30365: AO356_30365 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 7,087,170 to 7,088,210
_30365
AO356_30370: AO356_30370 - CoA-binding protein, at 7,088,279 to 7,090,393
_30370
AO356_30375: AO356_30375 - hypothetical protein, at 7,090,894 to 7,091,505
_30375
Group
Condition
AO356
_30355
AO356
_30360
AO356
_30365
AO356
_30370
AO356
_30375
stress
methylglyoxal 0.016 vol%
-0.2
-0.3
+0.1
-0.3
-1.4
carbon source
D-Fructose (C)
-0.3
-0.6
+0.0
-0.2
-0.8
stress
Nickel (II) chloride 0.625 mM
-0.1
-0.1
-0.0
-0.3
-1.2
stress
nitrite 10 mM
-0.2
+0.0
-0.1
+0.2
-1.6
carbon source
Carbon source Sucrose 10 mM
+0.0
-0.2
-0.0
-0.2
-1.2
carbon source
L-Lactate (C)
-0.3
-0.4
-0.1
+0.3
-1.0
nitrogen source
D-Serine (N)
-0.1
-0.6
-0.2
-0.2
-0.4
stress
Thallium(I) acetate 0.008 mg/ml
-0.1
-0.2
-0.1
+0.3
-1.2
carbon source
Carbon source D-Mannitol 2.5 mM
-0.3
+0.1
-0.1
-0.6
-0.4
stress
sodium fluoride 6.25 mM
+0.1
-0.3
-0.2
+0.0
-0.8
stress
acetate 40 mM
+0.2
-0.4
-0.1
-0.4
-0.3
carbon source
pyruvate (C)
-0.3
-0.3
+0.1
+0.2
-0.7
temperature
LB 10C
+0.2
-0.2
-0.1
+0.0
-0.9
survival
4C survival; 360 hrs
+0.0
-0.4
-0.3
+0.3
-0.5
nitrogen source
Putrescine (N)
-0.1
-0.3
+0.2
-0.4
-0.3
pH
Minimal media pH8
+0.1
+0.1
-0.2
+0.1
-1.0
nitrogen source
Urea (N)
+0.3
-0.1
-0.3
-0.0
-0.7
carbon source
L-Lysine (C)
+0.2
-0.1
-0.2
+0.2
-0.9
stress
Chlorite 0.04 mM
-0.1
-0.4
-0.2
-0.4
+0.4
lb
LB
+0.3
-0.4
+0.2
-0.5
-0.2
motility
outer cut, LB soft agar motility assay
+0.5
+0.1
-0.2
-0.2
-0.7
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.1
-0.3
-0.3
-0.8
+0.8
stress
D-Cycloserine 0.1 mg/ml
-0.2
-0.4
-0.0
-0.2
+0.6
stress
Chlorite 0.08 mM
-0.1
-0.0
-0.3
-0.1
+0.8
stress
Cholin acetate 40 mM
+0.3
-0.4
+0.1
-0.2
+0.7
stress
Benzalkonium Chloride 0.008 mg/ml
+0.2
-0.1
+0.2
-0.4
+0.6
motility
outer cut, LB soft agar motility assay
+0.7
-0.3
-0.3
-0.5
+1.0
lb
LB
+0.2
-0.0
-0.2
-0.2
+0.9
stress
Lomefloxacin 0.0005 mM
-0.1
+0.4
+0.0
+0.8
-0.4
motility
outer cut, LB soft agar motility assay
+0.1
-0.5
+0.6
+0.0
+1.2
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