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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_30215 and AO356_30220 are separated by 272 nucleotides
AO356_30220 and AO356_30225 are separated by 72 nucleotides
AO356_30225 and AO356_30230 are separated by 16 nucleotides
AO356_30230 and AO356_30235 are separated by 189 nucleotides
AO356_30215: AO356_30215 - (2Fe-2S)-binding protein, at 7,052,903 to 7,053,349
_30215
AO356_30220: AO356_30220 - aldehyde dehydrogenase, at 7,053,622 to 7,055,073
_30220
AO356_30225: AO356_30225 - choline dehydrogenase, at 7,055,146 to 7,056,786
_30225
AO356_30230: AO356_30230 - transmembrane reductase oxidoreductase, at 7,056,803 to 7,057,477
_30230
AO356_30235: AO356_30235 - LysR family transcriptional regulator, at 7,057,667 to 7,058,560
_30235
Group
Condition
AO356
_30215
AO356
_30220
AO356
_30225
AO356
_30230
AO356
_30235
carbon source
L-Malic (C)
-0.8
-0.2
-0.2
-0.2
-0.1
stress
copper (II) chloride 2.5 mM
-0.8
-0.1
-0.1
-0.4
-0.0
carbon source
L-Histidine (C)
-0.5
-0.0
-0.2
-0.3
-0.3
anaerobic
Nitrate reduction with yeast extract
-1.2
-0.1
-0.3
-0.1
+0.3
pH
Minimal media pH6
-0.4
-0.1
-0.2
-0.4
-0.3
survival
4C survival; 360 hrs
-0.5
-0.0
-0.2
-0.2
-0.3
carbon source
L-Lysine (C)
-0.5
-0.3
-0.1
-0.4
+0.0
pH
Minimal media pH9
-0.4
-0.1
-0.2
-0.4
-0.1
carbon source
Carbon source D-Glucose 10 mM
-0.7
+0.0
-0.1
-0.3
-0.1
carbon source
Glycerol (C)
-0.7
-0.1
-0.1
-0.3
-0.1
carbon source
L-Glutamic (C)
-0.6
-0.2
-0.1
-0.1
-0.1
carbon source
L-Aspartic Acid (C)
-0.5
-0.1
-0.2
-0.1
-0.2
carbon source
L-Histidine (C)
-0.2
-0.1
-0.1
-0.5
-0.2
carbon source
Carbon source D,L-Lactate 10 mM
-0.6
+0.1
-0.0
-0.4
-0.0
carbon source
L-Glutamine (C)
-0.5
-0.0
-0.1
-0.2
-0.2
carbon source
D-Sorbitol (C)
-0.6
-0.1
-0.1
-0.0
-0.1
carbon source
D-Trehalose (C)
-0.5
-0.3
+0.1
-0.1
-0.1
carbon source
Carbon source Sucrose 5 mM
-0.5
+0.0
-0.1
-0.4
+0.1
carbon source
L-Asparagine (C)
-0.6
-0.0
-0.1
+0.1
-0.2
stress
KB-half, Pseudo5 supernatant
+0.4
-0.1
-0.2
-0.7
-0.1
carbon source
D-Xylose (C)
-0.6
-0.0
-0.2
+0.1
+0.2
motility
outer cut, LB soft agar motility assay
-0.5
+0.3
+0.1
-0.5
+0.1
stress
perchlorate 75 mM
-0.2
-0.2
-0.1
+0.3
-0.2
carbon source
casaminos (C)
+0.5
-0.1
-0.1
-0.3
-0.3
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.6
+0.0
-0.0
+0.4
-0.0
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.5
-0.1
-0.1
-0.3
+0.1
carbon source
Carnitine Hydrochloride (C)
+0.8
-0.1
-0.1
+0.0
-0.2
stress
Paraquat dichloride 0.0625 mg/ml
+0.8
+0.1
-0.0
-0.3
-0.1
motility
outer cut, LB soft agar motility assay
+0.5
-0.1
+0.3
+0.1
-0.2
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.5
-0.5
+0.1
+0.3
+0.4
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