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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_30085 and AO356_30090 are separated by 281 nucleotides
AO356_30090 and AO356_30095 are separated by 239 nucleotides
AO356_30095 and AO356_30100 overlap by 4 nucleotides
AO356_30100 and AO356_30105 overlap by 19 nucleotides
AO356_30085: AO356_30085 - glutamine synthetase, at 7,021,470 to 7,022,804
_30085
AO356_30090: AO356_30090 - XRE family transcriptional regulator, at 7,023,086 to 7,023,685
_30090
AO356_30095: AO356_30095 - formyltetrahydrofolate deformylase, at 7,023,925 to 7,024,791
_30095
AO356_30100: AO356_30100 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase, at 7,024,788 to 7,025,693
_30100
AO356_30105: AO356_30105 - sarcosine oxidase subunit beta, at 7,025,675 to 7,026,916
_30105
Group
Condition
AO356
_30085
AO356
_30090
AO356
_30095
AO356
_30100
AO356
_30105
nitrogen source
L-tyrosine (N)
+0.0
-0.9
-0.1
-0.4
-0.2
lb
LB
-0.1
-0.1
-0.4
-0.4
-0.2
stress
syringaldehyde 10 mM
+0.0
-0.3
-0.1
-0.5
-0.3
stress
nitrate 200 mM
+0.0
-0.4
-0.3
-0.2
-0.2
temperature
LB 30C
-0.2
-0.1
-0.6
-0.3
+0.1
stress
Benzalkonium Chloride 0.008 mg/ml
-0.2
-0.0
-0.5
-0.1
-0.1
survival
4C survival; 360 hrs
-0.2
-0.5
-0.4
-0.1
+0.1
stress
Rifampicin 0.0016 mg/ml
+0.0
-0.3
-0.3
-0.3
-0.3
anaerobic
Nitrate reduction with yeast extract
+0.1
+0.1
-0.5
-0.4
-0.3
survival
4C survival; 672 hrs
-0.1
-0.4
-0.1
-0.1
-0.3
nitrogen source
L-Isoleucine (N)
+0.1
-0.3
-0.2
-0.1
-0.3
carbon source
D-Trehalose (C)
+0.0
-0.7
+0.1
-0.1
-0.3
nitrogen source
Thymine (N)
+0.1
-0.4
-0.2
-0.1
-0.2
stress
Benzethonium chloride 0.025 mM
-0.2
-0.3
-0.1
+0.1
-0.3
stress
Chlorite 0.08 mM
+0.0
+0.2
-0.3
-0.4
-0.3
nitrogen source
L-Phenylalanine (N)
-0.0
-0.8
-0.0
+0.2
-0.1
stress
nitrite 10 mM
+0.1
+0.0
-0.7
+0.0
-0.2
motility
outer cut, LB soft agar motility assay
+0.2
+0.4
+0.2
-1.0
-0.5
carbon source
L-Glutamic (C)
-0.2
-0.3
+0.1
-0.4
+0.1
survival
4C survival; 192 hrs
-0.3
-0.5
-0.2
+0.1
+0.2
stress
methylglyoxal 0.016 vol%
+0.3
+0.0
-0.3
-0.5
-0.3
carbon source
L-Lysine (C)
+0.1
-0.3
+0.2
-0.2
-0.3
lb
LB
-0.1
-0.2
-0.4
+0.2
-0.1
motility
outer cut, LB soft agar motility assay
-0.3
+0.1
-0.3
+0.2
-0.2
stress
Nickel (II) chloride 0.625 mM
-0.0
-0.3
+0.4
-0.1
-0.3
stress
Thallium(I) acetate 0.008 mg/ml
+0.0
-0.2
-0.2
+0.4
-0.2
survival
4C survival; 1152 hrs
-0.1
-0.4
+0.3
-0.1
+0.3
nitrogen source
Inosine (N)
+0.0
+0.6
-0.2
+0.3
-0.1
nitrogen source
Urea (N)
-0.3
+1.1
+0.0
-0.1
-0.1
nitrogen source
D-Serine (N)
+0.0
+2.5
-0.0
-0.2
-0.0
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