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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_30005 and AO356_30010 are separated by 0 nucleotides
AO356_30010 and AO356_30015 overlap by 32 nucleotides
AO356_30015 and AO356_30020 are separated by 289 nucleotides
AO356_30020 and AO356_30025 overlap by 4 nucleotides
AO356_30005: AO356_30005 - diguanylate cyclase, at 7,002,751 to 7,003,509
_30005
AO356_30010: AO356_30010 - transcriptional regulator, at 7,003,510 to 7,004,181
_30010
AO356_30015: AO356_30015 - histidine kinase, at 7,004,150 to 7,005,229
_30015
AO356_30020: AO356_30020 - hypothetical protein, at 7,005,519 to 7,006,031
_30020
AO356_30025: AO356_30025 - ferredoxin, at 7,006,028 to 7,006,957
_30025
Group
Condition
AO356
_30005
AO356
_30010
AO356
_30015
AO356
_30020
AO356
_30025
stress
nitrite 10 mM
-0.2
-1.0
-1.0
-0.3
-0.8
carbon source
L-Isoleucine (C)
-0.1
-0.6
-1.4
-0.4
-0.3
motility
outer cut, LB soft agar motility assay
+0.6
-1.5
-1.0
-0.1
-0.6
stress
Thallium(I) acetate 0.008 mg/ml
-0.2
-0.1
-0.8
-0.1
-1.3
stress
Paraquat dichloride 0.0625 mg/ml
-0.5
-0.5
-0.2
-0.9
-0.1
carbon source
D-Glucose (C)
-0.4
-0.3
-0.3
-0.5
-0.6
nitrogen source
L-tyrosine (N)
+0.2
-0.5
-0.8
-0.8
-0.1
stress
Chlorite 0.04 mM
-0.4
-0.6
-0.2
-0.3
-0.5
stress
Lomefloxacin 0.0005 mM
-0.2
-0.2
-0.2
-1.1
-0.2
motility
outer cut, LB soft agar motility assay
-0.2
-0.8
-0.5
+0.2
-0.4
carbon source
Inosine (C)
-0.3
+0.1
-0.7
-0.4
-0.2
survival
4C survival; 192 hrs
+0.0
-0.3
+0.2
-0.1
-1.3
stress
Bacitracin 2 mg/ml
-0.2
-0.5
-0.6
-0.2
+0.2
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.1
+0.2
-0.6
-0.5
-0.5
carbon source
Cytidine (C)
+0.2
-0.7
-0.5
-0.3
+0.2
carbon source
D,L-Lactate (C)
-0.5
-0.4
-0.4
+0.3
-0.1
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.2
+0.3
-1.0
-0.1
-0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.4
+0.2
-1.9
-0.1
+0.4
nitrogen source
L-Isoleucine (N)
-0.3
-0.4
-0.4
-0.3
+0.7
motility
outer cut, LB soft agar motility assay
+0.1
+1.1
-2.4
+1.0
-0.6
carbon source
L-Lysine (C)
-0.4
+0.2
-0.0
+0.5
-0.8
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.3
-0.1
+0.5
-0.9
+0.2
stress
methylglyoxal 0.016 vol%
-0.3
+0.1
+0.4
-0.8
+0.4
stress
syringaldehyde 5 mM
-0.4
+0.2
+0.5
+0.2
-0.5
stress
nitrate 200 mM
+0.4
-0.3
+0.3
+0.1
-0.6
stress
Choline chloride 500 mM
+0.1
+0.2
+0.6
-0.7
-0.2
nitrogen source
L-Leucine (N)
+1.1
-0.5
+0.0
-0.3
+0.2
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.6
-0.4
+0.4
-0.2
+0.6
survival
4C survival; 360 hrs
-0.0
+0.7
+0.7
-0.1
-0.1
anaerobic
Nitrate reduction with yeast extract
+0.7
-0.5
+1.3
+0.3
-0.0
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