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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_29900 and AO356_29905 are separated by 268 nucleotides
AO356_29905 and AO356_29910 are separated by 293 nucleotides
AO356_29910 and AO356_29915 are separated by 280 nucleotides
AO356_29915 and AO356_29920 are separated by 579 nucleotides
AO356_29900: AO356_29900 - L-fucose dehydrogenase, at 6,953,683 to 6,954,867
_29900
AO356_29905: AO356_29905 - hypothetical protein, at 6,955,136 to 6,955,807
_29905
AO356_29910: AO356_29910 - hypothetical protein, at 6,956,101 to 6,956,556
_29910
AO356_29915: AO356_29915 - hypothetical protein, at 6,956,837 to 6,957,559
_29915
AO356_29920: AO356_29920 - hypothetical protein, at 6,958,139 to 6,967,702
_29920
Group
Condition
AO356
_29900
AO356
_29905
AO356
_29910
AO356
_29915
AO356
_29920
carbon source
L-Lysine (C)
-0.4
-0.2
-0.1
-0.6
-0.1
stress
nitrite 10 mM
-0.3
-0.1
-0.1
-0.3
-0.1
stress
Choline chloride 500 mM
+0.0
+0.1
-0.1
-0.5
-0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.3
-0.3
+0.2
+0.1
-0.4
carbon source
D-Trehalose (C)
-0.1
+0.1
+0.2
-0.5
-0.0
survival
4C survival; 360 hrs
+0.1
-0.2
-0.5
+0.1
+0.1
stress
Nalidixic 0.004 mg/ml
-0.3
-0.1
+0.2
-0.1
-0.0
motility
outer cut, LB soft agar motility assay
-0.1
-0.4
+0.3
-0.2
+0.1
motility
outer cut, LB soft agar motility assay
-0.4
+0.2
-0.1
+0.0
+0.1
carbon source
Carbon source Sucrose 2.5 mM
+0.2
-0.1
+0.1
-0.5
+0.1
stress
Rifampicin 0.0024 mg/ml
+0.1
-0.0
-0.5
+0.4
-0.1
carbon source
L-Aspartic Acid (C)
-0.1
+0.1
+0.2
-0.3
-0.1
stress
Lomefloxacin 0.0005 mM
+0.0
+0.3
-0.3
-0.2
+0.1
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-0.3
-0.1
+0.2
+0.2
-0.0
nitrogen source
Inosine (N)
-0.2
+0.1
+0.3
-0.2
+0.1
motility
outer cut, LB soft agar motility assay
-0.1
+0.2
+0.3
-0.5
+0.1
stress
Sisomicin 0.001 mg/ml
-0.2
+0.1
-0.4
+0.4
+0.1
nitrogen source
Urea (N)
+0.1
+0.2
+0.1
-0.5
+0.1
anaerobic
Nitrate reduction with yeast extract
-0.6
+0.3
+0.2
-0.1
+0.3
carbon source
D-Xylose (C)
-0.2
+0.1
-0.2
+0.3
+0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.0
-0.1
+0.1
+0.6
-0.3
stress
methylglyoxal 0.016 vol%
+0.3
+0.0
+0.3
-0.1
-0.1
carbon source
Carbon source D-Mannitol 2.5 mM
+0.0
-0.2
+0.5
-0.1
+0.0
carbon source
Cytidine (C)
+0.2
-0.2
+0.1
+0.3
-0.1
carbon source
Carbon source Sucrose 5 mM
+0.1
+0.0
+0.4
-0.2
+0.1
carbon source
D-Xylose (C)
-0.2
+0.1
-0.0
+0.4
+0.2
carbon source
Carbon source Sucrose 5 mM
+0.1
+0.1
-0.2
+0.2
+0.1
stress
Nickel (II) chloride 0.625 mM
+0.2
+0.2
-0.0
+0.3
+0.2
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.1
+0.3
+0.2
+0.4
-0.1
carbon source
Carbon source Sucrose 10 mM
+0.2
+0.1
+0.4
+0.3
+0.2
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