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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_29890 and AO356_29895 are separated by 407 nucleotides
AO356_29895 and AO356_29900 are separated by 188 nucleotides
AO356_29900 and AO356_29905 are separated by 268 nucleotides
AO356_29905 and AO356_29910 are separated by 293 nucleotides
AO356_29890: AO356_29890 - phosphodiesterase, at 6,950,868 to 6,952,121
_29890
AO356_29895: AO356_29895 - AraC family transcriptional regulator, at 6,952,529 to 6,953,494
_29895
AO356_29900: AO356_29900 - L-fucose dehydrogenase, at 6,953,683 to 6,954,867
_29900
AO356_29905: AO356_29905 - hypothetical protein, at 6,955,136 to 6,955,807
_29905
AO356_29910: AO356_29910 - hypothetical protein, at 6,956,101 to 6,956,556
_29910
Group
Condition
AO356
_29890
AO356
_29895
AO356
_29900
AO356
_29905
AO356
_29910
survival
4C survival; 360 hrs
-0.1
-0.3
+0.1
-0.2
-0.5
stress
nitrate 200 mM
-0.2
-0.1
-0.4
-0.2
-0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.2
-0.3
-0.3
-0.3
+0.2
stress
KB-half, Pseudo5 supernatant
-0.1
-0.3
-0.0
-0.2
-0.1
stress
Sisomicin 0.001 mg/ml
-0.0
-0.2
-0.2
+0.1
-0.4
motility
outer cut, LB soft agar motility assay
+0.1
-0.3
-0.4
+0.2
-0.1
lb
LB
-0.1
-0.1
-0.1
+0.1
-0.4
pH
Minimal media pH7
+0.1
-0.2
+0.0
+0.0
-0.5
temperature
LB 30C
+0.2
-0.2
-0.0
-0.1
-0.4
motility
outer cut, LB soft agar motility assay
-0.0
-0.2
-0.1
-0.4
+0.3
anaerobic
Nitrate reduction with yeast extract
-0.2
-0.2
-0.6
+0.3
+0.2
carbon source
L-Lysine (C)
+0.0
+0.3
-0.4
-0.2
-0.1
pH
Minimal media pH9
-0.1
-0.1
-0.2
+0.2
-0.1
carbon source
D-Fructose (C)
+0.1
-0.3
-0.1
+0.1
-0.2
stress
Rifampicin 0.0024 mg/ml
-0.0
+0.2
+0.1
-0.0
-0.5
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-0.0
-0.1
-0.3
-0.1
+0.2
temperature
LB 30C
+0.1
-0.1
-0.0
+0.2
-0.4
motility
outer cut, LB soft agar motility assay
-0.3
-0.3
-0.1
+0.2
+0.3
carbon source
Carbon source D-Glucose 10 mM
-0.1
-0.2
-0.2
+0.1
+0.3
carbon source
D,L-Lactate (C)
+0.1
-0.1
-0.3
+0.1
+0.2
nitrogen source
L-Isoleucine (N)
+0.1
+0.2
+0.2
-0.1
-0.3
stress
copper (II) chloride 2.5 mM
-0.1
-0.3
+0.3
+0.2
+0.0
carbon source
Carbon source D-Mannitol 2.5 mM
-0.0
-0.2
+0.0
-0.2
+0.5
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.0
-0.2
-0.1
+0.0
+0.5
stress
Lomefloxacin 0.0005 mM
-0.2
+0.5
+0.0
+0.3
-0.3
nitrogen source
Inosine (N)
+0.1
+0.2
-0.2
+0.1
+0.3
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.1
+0.1
+0.1
+0.3
+0.2
carbon source
Carbon source D-Glucose 10 mM
-0.0
+0.2
+0.1
+0.1
+0.3
carbon source
Carbon source Sucrose 10 mM
-0.0
+0.0
+0.2
+0.1
+0.4
nitrogen source
Urea (N)
+0.1
+0.1
+0.1
+0.2
+0.1
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