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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_29790 and AO356_29795 are separated by 29 nucleotides
AO356_29795 and AO356_29800 are separated by 231 nucleotides
AO356_29800 and AO356_29805 are separated by 57 nucleotides
AO356_29805 and AO356_29810 overlap by 4 nucleotides
AO356_29790: AO356_29790 - ABC transporter permease, at 6,927,276 to 6,927,968
_29790
AO356_29795: AO356_29795 - amino acid transporter, at 6,927,998 to 6,928,804
_29795
AO356_29800: AO356_29800 - AraC family transcriptional regulator, at 6,929,036 to 6,929,836
_29800
AO356_29805: AO356_29805 - FAD-dependent oxidoreductase, at 6,929,894 to 6,931,318
_29805
AO356_29810: AO356_29810 - cupin, at 6,931,315 to 6,931,656
_29810
Group
Condition
AO356
_29790
AO356
_29795
AO356
_29800
AO356
_29805
AO356
_29810
stress
Cephalothin 2 mg/ml
-0.1
-0.8
+0.2
-0.2
-0.9
stress
acetate 40 mM
+0.1
-1.6
+0.2
-0.2
-0.1
anaerobic
Nitrate reduction with yeast extract
-0.4
-1.5
-0.1
+0.1
+0.3
stress
copper (II) chloride 2.5 mM
-0.1
-1.3
-0.1
+0.1
-0.1
stress
Benzalkonium Chloride 0.008 mg/ml
-0.3
-1.1
+0.0
+0.1
-0.1
stress
Benzalkonium Chloride 0.016 mg/ml
-0.1
-1.1
+0.3
-0.1
-0.4
carbon source
Putrescine (C)
+0.0
+0.3
+0.0
-0.3
-1.1
stress
Nalidixic 0.004 mg/ml
+0.0
-1.0
+0.1
-0.3
+0.1
carbon source
L-Glutamic (C)
+0.3
-0.8
-0.2
-0.1
-0.1
stress
Fusidic 0.1 mg/ml
+0.1
-1.3
+0.2
-0.1
+0.2
stress
methylglyoxal 0.016 vol%
+0.5
-1.3
-0.1
-0.1
+0.2
motility
outer cut, LB soft agar motility assay
-0.0
-0.9
+0.6
-0.1
-0.2
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.0
+0.9
+0.2
-0.2
-1.4
stress
Thallium(I) acetate 0.008 mg/ml
+0.3
-0.6
-0.2
+0.2
+0.3
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.2
+0.5
+0.1
+0.0
-0.7
motility
outer cut, LB soft agar motility assay
-0.5
+1.1
-0.2
+0.2
-0.4
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
+0.0
+0.8
+0.2
-0.1
-0.5
survival
4C survival; 672 hrs
+0.2
+0.8
+0.1
-0.0
-0.6
nitrogen source
D-Serine (N)
-0.0
+0.8
+0.2
-0.2
-0.3
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
+0.2
+1.0
+0.1
+0.0
-0.6
stress
Cisplatin 0.0032 mg/ml
-0.3
+1.0
-0.2
-0.0
+0.3
nitrogen source
Carnitine Hydrochloride (N)
+0.1
+0.9
-0.2
-0.3
+0.3
resistance
20 mM putrescine
+0.0
+0.8
+0.5
+0.0
-0.4
carbon source
Carbon source D-Glucose 10 mM
+0.4
+0.9
-0.1
-0.1
-0.2
stress
Nickel (II) chloride 0.625 mM
+0.0
+0.8
-0.2
+0.1
+0.5
resistance
10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
+0.2
+0.9
+0.4
+0.2
-0.4
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.3
+0.0
+0.4
+0.2
+0.8
carbon source
L-Lysine (C)
+0.3
-0.2
+0.1
+0.4
+1.3
stress
KB-half, Pseudo5 supernatant
+0.4
+0.7
+0.2
+0.3
+0.7
carbon source
L-Lysine (C)
+0.3
+0.7
-0.2
+0.2
+1.5
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