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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_29670 and AO356_29675 are separated by 72 nucleotides
AO356_29675 and AO356_29680 are separated by 10 nucleotides
AO356_29680 and AO356_29685 are separated by 39 nucleotides
AO356_29685 and AO356_29690 are separated by 144 nucleotides
AO356_29670: AO356_29670 - argininosuccinate lyase, at 6,902,083 to 6,903,510
_29670
AO356_29675: AO356_29675 - ABC transporter permease, at 6,903,583 to 6,904,461
_29675
AO356_29680: AO356_29680 - ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA, at 6,904,472 to 6,905,236
_29680
AO356_29685: AO356_29685 - ABC transporter substrate-binding protein, at 6,905,276 to 6,906,100
_29685
AO356_29690: AO356_29690 - polysaccharide deacetylase, at 6,906,245 to 6,907,087
_29690
Group
Condition
AO356
_29670
AO356
_29675
AO356
_29680
AO356
_29685
AO356
_29690
stress
Cholin acetate 40 mM
-0.3
-0.1
N.D.
-0.4
-0.8
stress
Cholin acetate 20 mM
-0.1
-0.4
N.D.
-0.4
-0.7
carbon source
L-Glutamic (C)
-0.5
-0.4
N.D.
-0.0
-0.4
carbon source
Carnitine Hydrochloride (C)
-0.1
-0.3
N.D.
-0.4
-0.3
carbon source
D-Alanine (C)
-0.2
-0.4
N.D.
-0.4
-0.0
carbon source
Carbon source Sucrose 5 mM
+0.3
-1.0
N.D.
-0.2
-0.0
carbon source
Cytidine (C)
-0.5
-0.3
N.D.
+0.1
-0.2
carbon source
NAG (C)
-0.3
-0.4
N.D.
-0.5
+0.2
stress
Choline chloride 300 mM
+0.2
-0.3
N.D.
-0.3
-0.4
stress
D-Cycloserine 0.1 mg/ml
+0.2
-0.5
N.D.
-0.4
+0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.3
-0.2
N.D.
-0.7
+0.1
carbon source
L-Proline (C)
-0.3
+0.2
N.D.
-0.6
+0.3
carbon source
Carbon source Sucrose 5 mM
+0.4
-0.5
N.D.
-0.1
+0.1
lb
LB
+0.2
-0.3
N.D.
-0.2
+0.3
carbon source
a-Ketoglutaric (C)
-0.2
+0.4
N.D.
-0.3
+0.2
carbon source
pyruvate (C)
-0.3
+0.4
N.D.
-0.3
+0.2
stress
nitrate 200 mM
-0.2
-0.4
N.D.
+0.1
+0.5
motility
outer cut, LB soft agar motility assay
+0.1
-0.5
N.D.
+0.5
+0.1
survival
4C survival; 24 hrs
+0.1
-0.4
N.D.
+0.5
-0.1
nitrogen source
Inosine (N)
+0.0
-0.4
N.D.
+0.6
+0.2
stress
syringaldehyde 10 mM
-0.1
+0.4
N.D.
-0.4
+0.4
carbon source
L-Arabinose (C)
-0.4
+0.7
N.D.
-0.1
+0.2
stress
syringaldehyde 5 mM
+0.1
+0.6
N.D.
-0.4
+0.1
stress
methylglyoxal 0.016 vol%
+0.3
+0.4
N.D.
-0.3
+0.2
stress
nitrite 10 mM
+0.5
-0.2
N.D.
+0.2
+0.3
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
+0.2
+0.2
N.D.
+0.3
+0.4
stress
Vanillin 1.25 mM
+0.2
+0.3
N.D.
-0.1
+0.6
pH
Minimal media pH6
+0.4
+0.5
N.D.
-0.1
+0.3
stress
Chlorite 0.04 mM
+0.3
+0.5
N.D.
+0.0
+0.4
motility
outer cut, LB soft agar motility assay
+0.4
+0.5
N.D.
+0.3
+0.1
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