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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_29495 and AO356_29500 are separated by 32 nucleotides
AO356_29500 and AO356_29505 are separated by 191 nucleotides
AO356_29505 and AO356_29510 are separated by 1 nucleotides
AO356_29510 and AO356_29515 are separated by 52 nucleotides
AO356_29495: AO356_29495 - NADPH:quinone oxidoreductase, at 6,860,598 to 6,861,572
_29495
AO356_29500: AO356_29500 - monooxygenase, at 6,861,605 to 6,861,964
_29500
AO356_29505: AO356_29505 - biopolymer transporter ExbD, at 6,862,156 to 6,862,557
_29505
AO356_29510: AO356_29510 - biopolymer transporter ExbB, at 6,862,559 to 6,863,278
_29510
AO356_29515: AO356_29515 - energy transducer TonB, at 6,863,331 to 6,864,140
_29515
Group
Condition
AO356
_29495
AO356
_29500
AO356
_29505
AO356
_29510
AO356
_29515
motility
outer cut, LB soft agar motility assay
+0.0
-1.4
+0.0
-0.4
-0.8
motility
outer cut, LB soft agar motility assay
+0.1
-0.3
+0.1
-0.0
-2.1
stress
syringaldehyde 5 mM
-0.3
-0.5
+0.1
+0.1
-1.4
stress
Vanillin 1.25 mM
-0.2
-0.4
+0.2
-0.4
-1.2
pH
Minimal media pH8
-0.4
+0.1
-0.3
-0.1
-1.2
lb
LB
-0.1
-0.1
-0.1
+0.1
-1.3
carbon source
L-Lysine (C)
+0.1
-0.2
+0.0
-0.2
-1.3
stress
D-Cycloserine 0.1 mg/ml
+0.0
-0.4
+0.1
-0.3
-0.9
stress
Rifampicin 0.0016 mg/ml
+0.3
-0.8
-0.4
-0.2
+0.1
stress
perchlorate 75 mM
+0.3
-0.1
+0.0
-0.1
-1.1
stress
Chlorite 0.08 mM
+0.3
+0.1
+0.1
-0.3
-1.0
carbon source
casaminos (C)
+0.3
+0.1
-0.1
-0.1
-0.9
stress
Vanillin 2.5 mM
-0.0
+0.2
+0.3
-0.0
-1.2
stress
Doxycycline hyclate 0.0001 mg/ml
+0.4
+0.1
-0.2
-0.6
-0.4
stress
Cephalothin 2 mg/ml
-0.3
-0.3
+0.5
-0.1
-0.3
stress
1-ethyl-3-methylimidazolium acetate 5 mM
-0.1
-0.5
+0.6
+0.2
-0.8
carbon source
L-Glutamic (C)
+0.3
+0.1
+0.1
+0.1
-1.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.6
+0.6
-0.0
-0.1
-0.3
stress
KB-half, Pseudo5 supernatant
+0.1
+0.3
+0.5
-0.1
-1.3
pH
Minimal media pH6
-0.4
+0.5
-0.3
+0.1
-0.2
motility
outer cut, LB soft agar motility assay
-0.6
-1.2
+0.4
+0.3
+0.8
stress
Sisomicin 0.001 mg/ml
+0.4
+0.3
+0.4
+0.1
-1.3
motility
outer cut, LB soft agar motility assay
-0.1
-0.5
+0.5
+0.3
+0.2
stress
copper (II) chloride 2.5 mM
-0.2
-0.2
-0.3
+0.1
+1.0
stress
Lomefloxacin 0.0005 mM
+0.2
+0.4
+0.6
-0.1
-0.4
stress
Thallium(I) acetate 0.008 mg/ml
-0.3
+0.3
-0.1
+0.2
+0.6
carbon source
succinate (C)
-0.2
+0.2
+0.1
-0.0
+1.0
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.2
+0.9
+0.6
+0.3
-0.4
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.6
+1.0
+0.2
+0.1
-0.1
stress
Cobalt chloride 0.08 mM
-0.0
-0.0
+0.1
+0.1
+1.6
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