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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_29490 and AO356_29495 are separated by 64 nucleotides
AO356_29495 and AO356_29500 are separated by 32 nucleotides
AO356_29500 and AO356_29505 are separated by 191 nucleotides
AO356_29505 and AO356_29510 are separated by 1 nucleotides
AO356_29490: AO356_29490 - ArsR family transcriptional regulator, at 6,860,231 to 6,860,533
_29490
AO356_29495: AO356_29495 - NADPH:quinone oxidoreductase, at 6,860,598 to 6,861,572
_29495
AO356_29500: AO356_29500 - monooxygenase, at 6,861,605 to 6,861,964
_29500
AO356_29505: AO356_29505 - biopolymer transporter ExbD, at 6,862,156 to 6,862,557
_29505
AO356_29510: AO356_29510 - biopolymer transporter ExbB, at 6,862,559 to 6,863,278
_29510
Group
Condition
AO356
_29490
AO356
_29495
AO356
_29500
AO356
_29505
AO356
_29510
motility
outer cut, LB soft agar motility assay
-1.3
-0.6
-1.2
+0.4
+0.3
motility
outer cut, LB soft agar motility assay
-0.3
+0.0
-1.4
+0.0
-0.4
phage
P5ss-5 phage 10-1 dilution SM calcl2
-1.7
-0.6
+0.6
-0.0
-0.1
stress
Vanillin 1.25 mM
-0.2
-0.2
-0.4
+0.2
-0.4
nitrogen source
L-Phenylalanine (N)
-0.8
-0.2
+0.1
+0.1
-0.2
motility
outer cut, LB soft agar motility assay
-0.7
+0.1
-0.3
+0.1
-0.0
lb
LB
-0.7
+0.1
-0.4
-0.0
+0.2
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.0
+0.0
-0.9
+0.2
-0.1
stress
Rifampicin 0.0016 mg/ml
+0.3
+0.3
-0.8
-0.4
-0.2
stress
Thallium(I) acetate 0.008 mg/ml
-0.8
-0.3
+0.3
-0.1
+0.2
stress
Bacitracin 2 mg/ml
-0.1
-0.4
+0.4
-0.2
-0.3
pH
Minimal media pH8
+0.3
-0.4
+0.1
-0.3
-0.1
stress
Cephalothin 2 mg/ml
+0.2
-0.3
-0.3
+0.5
-0.1
stress
Doxycycline hyclate 0.0001 mg/ml
+0.3
+0.4
+0.1
-0.2
-0.6
carbon source
D-Galactose (C)
-0.6
+0.1
+0.6
-0.0
-0.1
pH
Minimal media pH6
+0.1
-0.4
+0.5
-0.3
+0.1
stress
Benzalkonium Chloride 0.008 mg/ml
-0.6
+0.1
+0.5
+0.2
-0.1
stress
Cholin acetate 20 mM
-0.6
-0.0
-0.0
+0.6
+0.1
stress
1-ethyl-3-methylimidazolium acetate 5 mM
+0.1
-0.1
-0.5
+0.6
+0.2
stress
copper (II) chloride 2.5 mM
+0.8
-0.2
-0.2
-0.3
+0.1
anaerobic
Nitrate reduction with yeast extract
-0.3
+0.6
+0.0
+0.3
-0.2
stress
Lomefloxacin 0.0005 mM
-0.6
+0.2
+0.4
+0.6
-0.1
carbon source
Fumarate (C)
+0.4
+0.2
-0.3
+0.3
-0.1
motility
outer cut, LB soft agar motility assay
+0.5
-0.1
-0.5
+0.5
+0.3
carbon source
L-Proline (C)
+0.3
+0.3
+0.4
-0.3
+0.2
carbon source
L-Lysine (C)
+0.4
-0.1
+0.4
-0.2
+0.3
carbon source
L-Histidine (C)
+0.8
+0.1
-0.3
+0.1
+0.3
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.4
-0.2
+0.9
+0.6
+0.3
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
+0.5
+0.0
+0.6
+0.3
-0.2
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.2
+0.6
+1.0
+0.2
+0.1
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