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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_29330 and AO356_29335 are separated by 46 nucleotides
AO356_29335 and AO356_29340 are separated by 34 nucleotides
AO356_29340 and AO356_29345 are separated by 68 nucleotides
AO356_29345 and AO356_29350 are separated by 370 nucleotides
AO356_29330: AO356_29330 - ABC transporter substrate-binding protein, at 6,822,318 to 6,823,295
_29330
AO356_29335: AO356_29335 - sugar dehydrogenase, at 6,823,342 to 6,824,103
_29335
AO356_29340: AO356_29340 - multidrug DMT transporter permease, at 6,824,138 to 6,824,965
_29340
AO356_29345: AO356_29345 - LysR family transcriptional regulator, at 6,825,034 to 6,825,939
_29345
AO356_29350: AO356_29350 - hypothetical protein, at 6,826,310 to 6,826,585
_29350
Group
Condition
AO356
_29330
AO356
_29335
AO356
_29340
AO356
_29345
AO356
_29350
motility
outer cut, LB soft agar motility assay
-0.6
-0.0
-0.8
+0.0
-0.4
anaerobic
Nitrate reduction with yeast extract
-0.1
-0.1
+0.5
-0.5
-1.4
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.0
-0.2
-0.4
-0.3
-0.4
stress
Cisplatin 0.0032 mg/ml
-0.0
-0.1
-0.1
-0.3
-0.7
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.5
-0.2
-0.1
-0.0
-0.2
stress
Lomefloxacin 0.0005 mM
+0.1
-0.4
-0.4
-0.3
-0.1
lb
LB
-0.1
-0.2
-0.3
+0.1
-0.5
carbon source
acetate (C)
-0.2
+0.1
-0.2
-0.0
-0.6
stress
copper (II) chloride 2.5 mM
-0.3
-0.1
-0.4
-0.2
+0.2
carbon source
D,L-Lactate (C)
-0.4
+0.1
-0.2
-0.2
-0.1
carbon source
Carbon source D,L-Lactate 10 mM
-0.3
+0.1
-0.5
-0.1
-0.1
stress
Chloramphenicol 0.005 mg/ml
-0.0
-0.1
-0.3
+0.1
-0.5
stress
Sisomicin 0.001 mg/ml
-0.1
-0.2
+0.0
+0.0
-0.5
stress
Cholin acetate 40 mM
+0.1
-0.2
-0.2
-0.2
-0.2
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.1
-0.1
-0.4
+0.2
-0.3
stress
perchlorate 75 mM
-0.2
-0.3
-0.1
-0.1
+0.2
stress
1-ethyl-3-methylimidazolium acetate 5 mM
+0.1
+0.0
-0.6
+0.2
-0.4
motility
outer cut, LB soft agar motility assay
+0.1
-0.4
+0.2
-0.2
-0.3
carbon source
Carbon source D-Mannitol 10 mM
-0.3
+0.1
-0.3
-0.1
+0.1
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-0.1
-0.2
-0.2
+0.2
-0.3
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.1
-0.2
-0.2
+0.3
-0.4
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.1
-0.1
-0.3
+0.3
-0.3
carbon source
L-Lysine (C)
+0.1
-0.2
+0.2
-0.2
-0.3
carbon source
D-Glucose (C)
+0.1
-0.1
+0.1
+0.1
-0.5
stress
syringaldehyde 10 mM
-0.0
-0.1
+0.5
-0.1
-0.3
survival
4C survival; 1152 hrs
-0.1
+0.2
-0.0
-0.4
+0.4
carbon source
D-Alanine (C)
-0.1
-0.1
+0.3
-0.3
+0.4
stress
KB-half, Pseudo5 supernatant
-0.4
+0.1
+0.3
-0.2
+0.4
carbon source
Carbon source D-Glucose 10 mM
+0.3
+0.1
-0.4
+0.2
+0.1
carbon source
Carbon source D,L-Lactate 10 mM
+0.0
+0.3
-0.3
+0.3
-0.1
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