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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_29200 and AO356_29205 are separated by 444 nucleotides
AO356_29205 and AO356_29210 are separated by 75 nucleotides
AO356_29210 and AO356_29215 are separated by 184 nucleotides
AO356_29215 and AO356_29220 overlap by 4 nucleotides
AO356_29200: AO356_29200 - sugar ABC transporter substrate-binding protein, at 6,789,996 to 6,791,015
_29200
AO356_29205: AO356_29205 - hypothetical protein, at 6,791,460 to 6,792,710
_29205
AO356_29210: AO356_29210 - AAA family ATPase, at 6,792,786 to 6,794,777
_29210
AO356_29215: AO356_29215 - dehydrogenase, at 6,794,962 to 6,795,984
_29215
AO356_29220: AO356_29220 - hydroxypyruvate isomerase, at 6,795,981 to 6,796,772
_29220
Group
Condition
AO356
_29200
AO356
_29205
AO356
_29210
AO356
_29215
AO356
_29220
anaerobic
Nitrate reduction with yeast extract
+0.6
+0.3
+0.1
+0.7
-5.1
stress
Cholin acetate 20 mM
-0.6
-0.2
-0.3
+0.1
-1.0
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.4
-0.2
-0.3
+0.2
-1.0
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.6
-0.3
+0.4
-0.2
-0.9
nitrogen source
Adenosine (N)
-0.4
-0.2
-0.2
-0.4
-0.3
stress
Bacitracin 2 mg/ml
+0.2
-0.1
-0.2
-0.0
-1.1
stress
acetate 40 mM
-0.2
+0.1
+0.1
-0.1
-1.1
motility
outer cut, LB soft agar motility assay
+0.4
-0.3
-0.2
-0.1
-1.0
stress
nitrite 10 mM
-0.9
+0.0
-0.2
+0.3
-0.4
nitrogen source
Urea (N)
+0.7
-0.2
-0.1
-0.2
-0.9
stress
Cholin acetate 40 mM
-0.7
+0.1
-0.3
-0.0
+0.4
stress
Ceftazidime 0.2 mg/ml
-0.3
-0.2
-0.4
+0.3
+0.2
lb
LB
-0.7
-0.2
-0.0
+0.4
+0.1
carbon source
Cytidine (C)
+0.2
+0.1
-0.1
+0.4
-1.0
carbon source
L-Malic (C)
-0.3
+0.0
+0.2
-0.3
+0.5
stress
Chlorite 0.04 mM
-0.5
+0.2
-0.0
-0.2
+0.8
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.3
-0.2
-0.3
+0.4
+0.3
lb
LB
+0.5
-0.4
+0.0
+0.1
+0.4
stress
syringaldehyde 5 mM
+0.2
-0.1
+0.1
-0.3
+0.7
carbon source
Carbon source D-Mannitol 10 mM
+0.5
+0.2
+0.1
+0.3
-0.3
stress
methylglyoxal 0.016 vol%
+0.4
-0.3
+0.0
+0.2
+0.5
stress
Paraquat dichloride 0.0625 mg/ml
+0.2
+0.1
+0.1
-0.3
+0.9
stress
Cobalt chloride 0.08 mM
+0.3
+0.0
-0.2
+0.3
+0.6
stress
Cisplatin 0.0032 mg/ml
+0.6
-0.1
+0.2
-0.2
+0.6
carbon source
a-Ketoglutaric (C)
-0.0
+0.1
+0.0
-0.1
+1.2
stress
Thallium(I) acetate 0.008 mg/ml
+0.7
+0.1
+0.2
-0.3
+0.7
carbon source
Carbon source D,L-Lactate 10 mM
+0.6
+0.0
-0.0
+0.4
+0.4
carbon source
Carbon source Sucrose 10 mM
+0.7
+0.4
+0.0
+0.2
+0.4
motility
outer cut, LB soft agar motility assay
+0.9
+0.0
+0.2
+0.0
+0.6
stress
copper (II) chloride 2.5 mM
+1.0
+0.5
-0.0
-0.3
+1.1
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