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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_29125 and AO356_29130 are separated by 48 nucleotides
AO356_29130 and AO356_29135 are separated by 126 nucleotides
AO356_29135 and AO356_29140 are separated by 4 nucleotides
AO356_29140 and AO356_29145 are separated by 69 nucleotides
AO356_29125: AO356_29125 - vanillate monooxygenase, at 6,770,154 to 6,771,197
_29125
AO356_29130: AO356_29130 - MFS transporter, at 6,771,246 to 6,772,445
_29130
AO356_29135: AO356_29135 - RND transporter, at 6,772,572 to 6,775,103
_29135
AO356_29140: AO356_29140 - BNR domain-containing protein, at 6,775,108 to 6,776,211
_29140
AO356_29145: AO356_29145 - hypothetical protein, at 6,776,281 to 6,777,645
_29145
Group
Condition
AO356
_29125
AO356
_29130
AO356
_29135
AO356
_29140
AO356
_29145
carbon source
L-Lysine (C)
-2.1
-0.2
-0.3
N.D.
-0.1
stress
Benzalkonium Chloride 0.016 mg/ml
-1.6
-0.5
-0.1
N.D.
+0.1
motility
outer cut, LB soft agar motility assay
-1.2
-0.5
-0.2
N.D.
+0.0
carbon source
L-Histidine (C)
-1.4
-0.3
-0.1
N.D.
-0.0
stress
nitrite 10 mM
-1.4
-0.1
-0.1
N.D.
-0.2
stress
KB-half, Pseudo5 supernatant
-1.0
-0.5
+0.2
N.D.
-0.3
carbon source
Carbon source D-Glucose 10 mM
-0.5
-0.6
-0.2
N.D.
-0.2
carbon source
Ethanol (C)
-1.0
-0.2
+0.0
N.D.
-0.2
carbon source
D-Glucose (C)
-1.8
+0.3
+0.1
N.D.
-0.0
stress
Tetracycline 0.0001 mg/ml
-1.2
-0.5
-0.1
N.D.
+0.3
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.9
-0.1
-0.1
N.D.
-0.3
stress
Cobalt chloride 0.08 mM
-1.4
+0.1
-0.1
N.D.
+0.1
stress
Sisomicin 0.001 mg/ml
-0.2
-0.9
-0.1
N.D.
-0.1
carbon source
D-Ribose (C)
-1.4
+0.1
+0.0
N.D.
-0.0
stress
Fusidic 0.1 mg/ml
-0.8
-0.4
-0.1
N.D.
+0.2
nitrogen source
Gly-Glu (N)
-1.2
-0.2
+0.1
N.D.
+0.1
lb
LB
-0.4
-0.6
-0.2
N.D.
+0.2
stress
nitrate 200 mM
-0.5
-0.6
+0.2
N.D.
+0.1
stress
Chlorite 0.04 mM
-0.7
-0.3
+0.1
N.D.
+0.1
nitrogen source
L-tyrosine (N)
-1.2
+0.4
-0.1
N.D.
+0.1
stress
Rifampicin 0.0024 mg/ml
-0.9
+0.2
+0.0
N.D.
-0.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-1.0
+0.2
-0.1
N.D.
+0.2
carbon source
Carbon source D-Mannitol 10 mM
-0.8
-0.2
+0.2
N.D.
+0.1
stress
Benzalkonium Chloride 0.008 mg/ml
-1.0
+0.0
+0.2
N.D.
+0.2
stress
Lomefloxacin 0.0005 mM
-0.4
+0.6
-0.0
N.D.
-0.4
stress
Cisplatin 0.0032 mg/ml
+0.7
-0.5
-0.2
N.D.
-0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.6
-1.1
+0.2
N.D.
+0.3
stress
copper (II) chloride 2.5 mM
+0.7
-0.4
-0.1
N.D.
+0.1
carbon source
L-Aspartic Acid (C)
+0.9
+0.1
-0.1
N.D.
+0.3
motility
outer cut, LB soft agar motility assay
+1.3
+0.3
+0.1
N.D.
-0.1
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