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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_29045 and AO356_29050 are separated by 581 nucleotides
AO356_29050 and AO356_29055 are separated by 157 nucleotides
AO356_29055 and AO356_29060 are separated by 252 nucleotides
AO356_29060 and AO356_29065 are separated by 104 nucleotides
AO356_29045: AO356_29045 - hypothetical protein, at 6,751,532 to 6,752,020
_29045
AO356_29050: AO356_29050 - hypothetical protein, at 6,752,602 to 6,755,649
_29050
AO356_29055: AO356_29055 - LysR family transcriptional regulator, at 6,755,807 to 6,756,709
_29055
AO356_29060: AO356_29060 - hypothetical protein, at 6,756,962 to 6,757,696
_29060
AO356_29065: AO356_29065 - hypothetical protein, at 6,757,801 to 6,758,931
_29065
Group
Condition
AO356
_29045
AO356
_29050
AO356
_29055
AO356
_29060
AO356
_29065
carbon source
L-Lysine (C)
N.D.
-0.6
-0.2
-0.3
-0.2
stress
Chlorite 0.04 mM
N.D.
-0.2
-0.1
-0.6
-0.0
pH
Minimal media pH9
N.D.
-0.1
-0.1
-0.8
+0.1
carbon source
L-Lysine (C)
N.D.
-0.6
-0.0
-0.1
+0.0
stress
Choline chloride 300 mM
N.D.
-0.1
-0.2
-0.3
-0.1
survival
4C survival; 24 hrs
N.D.
-0.2
-0.2
-0.4
+0.1
nitrogen source
Putrescine (N)
N.D.
-0.1
+0.1
-0.3
-0.2
anaerobic
Nitrate reduction with yeast extract
N.D.
-0.7
+0.1
+0.3
-0.2
carbon source
L-Leucine (C)
N.D.
+0.1
-0.2
-0.4
-0.0
carbon source
L-Histidine (C)
N.D.
-0.4
+0.1
+0.1
-0.3
carbon source
D-Sorbitol (C)
N.D.
-0.6
+0.0
+0.1
+0.1
carbon source
Glycerol (C)
N.D.
-0.3
+0.3
-0.1
-0.2
stress
Sisomicin 0.001 mg/ml
N.D.
+0.1
-0.2
-0.5
+0.3
carbon source
Glycerol (C)
N.D.
-0.1
+0.2
-0.4
+0.0
stress
Spectinomycin 0.0125 mg/ml
N.D.
-0.2
-0.3
+0.1
+0.2
carbon source
Carbon source D-Glucose 10 mM
N.D.
+0.1
-0.2
-0.3
+0.3
carbon source
L-Alanine (C)
N.D.
-0.2
+0.3
-0.2
-0.1
carbon source
Putrescine (C)
N.D.
-0.1
+0.2
-0.3
+0.2
nitrogen source
L-Leucine (N)
N.D.
-0.1
+0.3
-0.4
+0.2
stress
Cisplatin 0.0032 mg/ml
N.D.
-0.1
+0.2
+0.3
-0.2
nitrogen source
Uridine (N)
N.D.
-0.2
+0.1
+0.2
+0.2
phage
P5ss-5 phage 10-1 dilution SM calcl2
N.D.
+0.0
+0.3
+0.3
-0.2
lb
LB
N.D.
-0.0
+0.1
+0.5
-0.1
stress
Cisplatin 0.0032 mg/ml
N.D.
+0.2
-0.1
+0.1
+0.3
carbon source
a-Ketoglutaric (C)
N.D.
+0.3
-0.1
+0.3
+0.2
stress
Lomefloxacin 0.0005 mM
N.D.
+0.2
+0.3
+0.5
-0.3
stress
Nickel (II) chloride 0.625 mM
N.D.
+0.1
+0.1
+0.2
+0.4
stress
methylglyoxal 0.016 vol%
N.D.
+0.3
+0.1
+0.4
+0.0
motility
outer cut, LB soft agar motility assay
N.D.
+0.4
+0.4
-0.1
+0.3
motility
outer cut, LB soft agar motility assay
N.D.
-0.2
+0.1
+0.7
+0.7
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