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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_28940 and AO356_28945 are separated by 41 nucleotides
AO356_28945 and AO356_28950 are separated by 126 nucleotides
AO356_28950 and AO356_28955 are separated by 105 nucleotides
AO356_28955 and AO356_28960 are separated by 268 nucleotides
AO356_28940: AO356_28940 - LysR family transcriptional regulator, at 6,729,312 to 6,730,253
_28940
AO356_28945: AO356_28945 - aminomethyltransferase, at 6,730,295 to 6,730,909
_28945
AO356_28950: AO356_28950 - LysR family transcriptional regulator, at 6,731,036 to 6,731,926
_28950
AO356_28955: AO356_28955 - hypothetical protein, at 6,732,032 to 6,732,301
_28955
AO356_28960: AO356_28960 - FMN reductase, at 6,732,570 to 6,733,133
_28960
Group
Condition
AO356
_28940
AO356
_28945
AO356
_28950
AO356
_28955
AO356
_28960
carbon source
casaminos (C)
-0.3
-0.2
-0.1
-0.9
N.D.
carbon source
L-Leucine (C)
-0.2
-0.4
-0.1
-0.5
N.D.
carbon source
Cytidine (C)
-0.1
-0.7
+0.0
-0.4
N.D.
carbon source
Carbon source D-Mannitol 2.5 mM
-0.0
-0.5
+0.2
-0.7
N.D.
stress
methylglyoxal 0.016 vol%
-0.0
-0.4
-0.5
-0.1
N.D.
nitrogen source
Carnitine Hydrochloride (N)
-0.0
-0.3
+0.3
-1.1
N.D.
nitrogen source
D-Serine (N)
-0.3
+0.1
-0.2
-0.6
N.D.
nitrogen source
L-Leucine (N)
-0.4
-0.6
+0.0
+0.1
N.D.
nitrogen source
L-Phenylalanine (N)
-0.2
-0.3
+0.1
-0.6
N.D.
stress
nitrite 10 mM
+0.1
+0.3
-0.6
-0.7
N.D.
carbon source
NAG (C)
-0.0
-0.4
+0.1
-0.5
N.D.
pH
Minimal media pH8
+0.3
-0.1
-0.3
-0.7
N.D.
stress
Tetracycline 0.0001 mg/ml
+0.2
+0.1
-0.4
-0.6
N.D.
carbon source
L-Arabinose (C)
+0.2
+0.1
-0.2
-0.7
N.D.
carbon source
Carbon source Sucrose 2.5 mM
-0.2
+0.2
+0.2
-0.5
N.D.
carbon source
acetate (C)
+0.1
-0.4
-0.3
+0.4
N.D.
carbon source
L-Aspartic Acid (C)
-0.0
-0.6
+0.2
+0.4
N.D.
stress
copper (II) chloride 2.5 mM
+0.4
-0.1
-0.5
+0.2
N.D.
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.1
-0.4
-0.1
+0.7
N.D.
carbon source
L-Malic (C)
-0.1
-0.5
+0.1
+0.6
N.D.
stress
Thallium(I) acetate 0.008 mg/ml
+0.0
-0.2
-0.4
+0.7
N.D.
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.3
+0.5
-0.2
+0.4
N.D.
stress
Sisomicin 0.001 mg/ml
+0.4
-0.3
+0.4
-0.0
N.D.
carbon source
D-Fructose (C)
+0.1
+0.3
-0.3
+0.4
N.D.
carbon source
L-Histidine (C)
+0.1
-0.5
+0.4
+0.6
N.D.
carbon source
L-Glutamic (C)
-0.2
+0.1
+0.1
+0.7
N.D.
carbon source
Ethanol (C)
-0.2
+0.6
+0.2
+0.3
N.D.
stress
Rifampicin 0.0016 mg/ml
+0.1
+0.3
+0.2
+0.5
N.D.
anaerobic
Nitrate reduction with yeast extract
+0.2
+0.3
+0.2
+0.8
N.D.
motility
outer cut, LB soft agar motility assay
+0.3
+0.3
+0.6
+0.5
N.D.
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