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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_28930 and AO356_28935 are separated by 330 nucleotides
AO356_28935 and AO356_28940 are separated by 185 nucleotides
AO356_28940 and AO356_28945 are separated by 41 nucleotides
AO356_28945 and AO356_28950 are separated by 126 nucleotides
AO356_28930: AO356_28930 - thiamine permease, at 6,726,697 to 6,728,127
_28930
AO356_28935: AO356_28935 - FMN-dependent NADH-azoreductase, at 6,728,458 to 6,729,126
_28935
AO356_28940: AO356_28940 - LysR family transcriptional regulator, at 6,729,312 to 6,730,253
_28940
AO356_28945: AO356_28945 - aminomethyltransferase, at 6,730,295 to 6,730,909
_28945
AO356_28950: AO356_28950 - LysR family transcriptional regulator, at 6,731,036 to 6,731,926
_28950
Group
Condition
AO356
_28930
AO356
_28935
AO356
_28940
AO356
_28945
AO356
_28950
carbon source
Carbon source D-Mannitol 10 mM
+0.0
-0.2
-0.1
-0.3
-0.4
nitrogen source
L-Leucine (N)
-0.1
+0.1
-0.4
-0.6
+0.0
stress
methylglyoxal 0.016 vol%
+0.2
-0.3
-0.0
-0.4
-0.5
carbon source
Cytidine (C)
-0.0
-0.1
-0.1
-0.7
+0.0
survival
4C survival; 192 hrs
+0.0
-0.1
+0.1
-0.5
-0.3
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
-0.3
+0.0
-0.2
-0.4
carbon source
acetate (C)
-0.2
+0.0
+0.1
-0.4
-0.3
pH
Minimal media pH7
+0.1
-0.2
-0.0
-0.5
-0.1
anaerobic
Nitrate reduction with yeast extract
-0.5
-0.8
+0.2
+0.3
+0.2
carbon source
Carbon source Sucrose 10 mM
+0.0
-0.2
-0.3
+0.1
-0.3
stress
copper (II) chloride 2.5 mM
-0.0
-0.4
+0.4
-0.1
-0.5
carbon source
Carbon source D-Mannitol 2.5 mM
+0.1
-0.2
-0.0
-0.5
+0.2
carbon source
L-Aspartic Acid (C)
-0.1
+0.1
-0.0
-0.6
+0.2
stress
nitrite 10 mM
-0.2
-0.0
+0.1
+0.3
-0.6
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.2
+0.2
-0.0
-0.5
+0.1
carbon source
L-Lysine (C)
+0.1
+0.2
-0.1
-0.1
-0.4
nitrogen source
D-Alanine (N)
-0.2
+0.0
-0.3
-0.2
+0.2
stress
Lomefloxacin 0.0005 mM
+0.0
+0.4
-0.2
-0.4
-0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.1
-0.1
-0.3
+0.5
-0.2
resistance
10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.2
+0.1
+0.2
-0.4
+0.1
stress
Sisomicin 0.001 mg/ml
-0.2
-0.1
+0.4
-0.3
+0.4
carbon source
L-Histidine (C)
+0.1
+0.2
+0.1
-0.5
+0.4
stress
Benzalkonium Chloride 0.016 mg/ml
+0.2
+0.1
-0.0
+0.4
-0.4
stress
Nickel (II) chloride 0.625 mM
-0.0
+0.1
+0.2
+0.3
-0.3
nitrogen source
Cytosine (N)
-0.0
-0.1
-0.1
+0.5
+0.2
carbon source
Ethanol (C)
+0.0
-0.0
-0.2
+0.6
+0.2
motility
outer cut, LB soft agar motility assay
-0.3
-0.2
+0.3
+0.3
+0.6
motility
outer cut, LB soft agar motility assay
-0.1
+0.0
+0.5
+0.3
+0.1
stress
Rifampicin 0.0016 mg/ml
+0.1
+0.2
+0.1
+0.3
+0.2
stress
Bacitracin 2 mg/ml
+0.1
+0.3
+0.2
+0.4
+0.0
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