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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_28855 and AO356_28860 overlap by 1 nucleotides
AO356_28860 and AO356_28865 overlap by 32 nucleotides
AO356_28865 and AO356_28870 are separated by 30 nucleotides
AO356_28870 and AO356_28875 are separated by 287 nucleotides
AO356_28855: AO356_28855 - structural protein MipA, at 6,711,328 to 6,712,125
_28855
AO356_28860: AO356_28860 - transcriptional regulator, at 6,712,125 to 6,712,811
_28860
AO356_28865: AO356_28865 - histidine kinase, at 6,712,780 to 6,714,174
_28865
AO356_28870: AO356_28870 - MFS transporter, at 6,714,205 to 6,715,479
_28870
AO356_28875: AO356_28875 - porin, at 6,715,767 to 6,717,020
_28875
Group
Condition
AO356
_28855
AO356
_28860
AO356
_28865
AO356
_28870
AO356
_28875
motility
outer cut, LB soft agar motility assay
-0.0
-1.7
-0.5
-0.4
+0.2
carbon source
L-Lysine (C)
-0.5
-1.3
-0.0
-0.3
+0.2
stress
Benzalkonium Chloride 0.016 mg/ml
-0.2
-0.9
+0.0
+0.0
-0.2
carbon source
L-Isoleucine (C)
+0.0
-0.6
-0.2
-0.2
-0.1
stress
Benzalkonium Chloride 0.008 mg/ml
-0.1
-0.4
+0.1
-0.4
-0.1
motility
outer cut, LB soft agar motility assay
-0.1
+0.4
-0.4
-0.4
-0.3
nitrogen source
L-tyrosine (N)
-0.2
+0.4
-0.2
-0.3
-0.4
stress
Sisomicin 0.001 mg/ml
+0.0
-0.7
+0.4
-0.2
-0.2
stress
Spectinomycin 0.0125 mg/ml
-0.2
+0.3
+0.1
-0.3
-0.3
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.0
-0.4
-0.3
+0.5
-0.2
stress
Aluminum chloride 5 mM
-0.2
-0.4
+0.2
+0.2
-0.2
motility
outer cut, LB soft agar motility assay
+0.1
-0.7
-0.2
+0.2
+0.2
stress
Ceftazidime 0.2 mg/ml
+0.1
-0.8
+0.1
+0.1
+0.2
carbon source
pyruvate (C)
+0.1
-0.7
-0.3
+0.2
+0.3
stress
1-ethyl-3-methylimidazolium acetate 5 mM
+0.2
-0.4
+0.0
+0.2
-0.3
stress
Nalidixic 0.004 mg/ml
-0.2
+0.6
-0.2
-0.0
-0.3
stress
perchlorate 75 mM
-0.1
+0.5
-0.0
-0.2
-0.3
carbon source
D-Lactate (C)
+0.1
-0.5
-0.2
+0.4
+0.0
carbon source
succinate (C)
+0.1
-0.9
+0.0
+0.3
+0.4
stress
Cobalt chloride 0.08 mM
-0.1
-0.5
-0.2
+0.4
+0.5
carbon source
Carbon source Sucrose 2.5 mM
+0.3
-0.1
-0.3
+0.1
+0.3
stress
Thallium(I) acetate 0.008 mg/ml
-0.1
+0.8
+0.1
-0.1
-0.3
carbon source
D-Glucose (C)
+0.2
-0.4
+0.1
+0.1
+0.3
motility
outer cut, LB soft agar motility assay
-0.3
+0.7
+0.2
-0.1
-0.0
stress
Lomefloxacin 0.0005 mM
+0.0
+0.6
+0.2
-0.1
-0.2
carbon source
Carbon source Sucrose 10 mM
+0.2
-0.2
+0.3
+0.2
+0.4
stress
copper (II) chloride 2.5 mM
+0.2
+0.7
+0.3
+0.2
+0.1
anaerobic
Nitrate reduction with yeast extract
+0.6
+0.6
-0.4
+0.7
+0.2
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.6
-0.5
+0.8
+0.3
+0.7
stress
KB-half, Pseudo5 supernatant
+0.6
+0.3
+0.5
+0.2
+0.6
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