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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_28710 and AO356_28715 are separated by 82 nucleotides
AO356_28715 and AO356_28720 are separated by 478 nucleotides
AO356_28720 and AO356_28725 are separated by 101 nucleotides
AO356_28725 and AO356_28730 are separated by 3 nucleotides
AO356_28710: AO356_28710 - aldehyde dehydrogenase, at 6,671,206 to 6,672,627
_28710
AO356_28715: AO356_28715 - amino acid permease, at 6,672,710 to 6,674,158
_28715
AO356_28720: AO356_28720 - chemotaxis protein, at 6,674,637 to 6,676,688
_28720
AO356_28725: AO356_28725 - RND transporter, at 6,676,790 to 6,677,959
_28725
AO356_28730: AO356_28730 - acriflavine resistance protein B, at 6,677,963 to 6,681,058
_28730
Group
Condition
AO356
_28710
AO356
_28715
AO356
_28720
AO356
_28725
AO356
_28730
carbon source
Carbon source Sucrose 10 mM
-2.0
-0.2
-0.2
N.D.
-0.4
stress
Lomefloxacin 0.0005 mM
-0.1
+0.3
+0.2
N.D.
-3.1
stress
Spectinomycin 0.025 mg/ml
+1.0
+0.0
+0.1
N.D.
-3.4
carbon source
Carbon source D,L-Lactate 10 mM
-1.0
-0.2
-0.2
N.D.
-0.5
nitrogen source
Inosine (N)
-1.3
-0.1
-0.3
N.D.
-0.3
survival
4C survival; 360 hrs
-1.5
-0.0
-0.4
N.D.
+0.2
stress
copper (II) chloride 2.5 mM
-0.6
-0.3
-0.0
N.D.
-0.8
carbon source
Ethanol (C)
-1.2
-0.1
-0.3
N.D.
+0.0
carbon source
Carbon source D-Mannitol 5 mM
-0.9
-0.4
+0.1
N.D.
-0.1
carbon source
D-Fructose (C)
-1.1
+0.1
-0.0
N.D.
-0.2
stress
methylglyoxal 0.016 vol%
-1.3
-0.2
-0.1
N.D.
+0.3
stress
Nickel (II) chloride 0.625 mM
-1.1
+0.3
+0.1
N.D.
-0.5
stress
Rifampicin 0.0024 mg/ml
+0.5
-0.0
+0.0
N.D.
-1.5
survival
4C survival; 672 hrs
+0.3
-0.4
+0.0
N.D.
-1.0
anaerobic
Nitrate reduction with yeast extract
-0.2
-0.5
-0.8
N.D.
+0.6
carbon source
D-Trehalose (C)
-0.8
-0.3
-0.1
N.D.
+0.3
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-1.4
+0.3
+0.3
N.D.
+0.0
stress
Spectinomycin 0.0125 mg/ml
+1.0
-0.1
-0.0
N.D.
-1.6
stress
Cholin acetate 20 mM
-1.4
+0.2
+0.2
N.D.
+0.2
stress
Choline chloride 300 mM
+0.5
-0.0
-0.1
N.D.
-1.1
stress
acetate 40 mM
-1.2
+0.3
-0.1
N.D.
+0.3
stress
Cobalt chloride 0.08 mM
+0.3
+0.3
+0.1
N.D.
-1.1
carbon source
L-Malic (C)
+0.9
-0.6
-0.1
N.D.
-0.1
lb
LB
+0.9
-0.1
-0.1
N.D.
-0.4
stress
Sisomicin 0.001 mg/ml
+1.0
-0.2
-0.4
N.D.
-0.1
resistance
20 mM putrescine
+1.0
+0.2
-0.5
N.D.
-0.2
nitrogen source
Urea (N)
+1.0
+0.1
-0.4
N.D.
+0.3
stress
Cisplatin 0.0032 mg/ml
+0.9
-0.2
-0.1
N.D.
+0.5
stress
Fusidic 0.1 mg/ml
+0.7
+0.0
-0.0
N.D.
+0.8
motility
outer cut, LB soft agar motility assay
+1.1
+0.0
+0.4
N.D.
+0.2
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