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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_28695 and AO356_28700 are separated by 216 nucleotides
AO356_28700 and AO356_28705 are separated by 82 nucleotides
AO356_28705 and AO356_28710 are separated by 11 nucleotides
AO356_28710 and AO356_28715 are separated by 82 nucleotides
AO356_28695: AO356_28695 - IclR family transcriptional regulator, at 6,667,468 to 6,668,220
_28695
AO356_28700: AO356_28700 - hypothetical protein, at 6,668,437 to 6,669,762
_28700
AO356_28705: AO356_28705 - hypothetical protein, at 6,669,845 to 6,671,194
_28705
AO356_28710: AO356_28710 - aldehyde dehydrogenase, at 6,671,206 to 6,672,627
_28710
AO356_28715: AO356_28715 - amino acid permease, at 6,672,710 to 6,674,158
_28715
Group
Condition
AO356
_28695
AO356
_28700
AO356
_28705
AO356
_28710
AO356
_28715
survival
4C survival; 360 hrs
-2.7
+0.1
-0.2
-1.5
-0.0
carbon source
acetate (C)
-2.6
-0.4
-0.3
-0.2
-0.2
carbon source
Carbon source Sucrose 10 mM
-1.0
-0.1
-0.1
-2.0
-0.2
anaerobic
Nitrate reduction with yeast extract
-3.3
+0.1
+0.6
-0.2
-0.5
stress
Cholin acetate 40 mM
-1.2
-0.4
-0.2
-0.8
-0.1
carbon source
Carbon source D-Mannitol 10 mM
-1.7
-0.4
-0.1
-0.3
-0.2
stress
acetate 40 mM
-1.1
-0.1
-0.5
-1.2
+0.3
carbon source
Carbon source Sucrose 5 mM
-1.7
-0.3
+0.1
-0.2
-0.4
nitrogen source
L-tyrosine (N)
-1.6
+0.2
-0.2
-0.9
+0.1
carbon source
Carbon source D-Mannitol 5 mM
-0.8
-0.2
-0.1
-0.9
-0.4
survival
4C survival; 1152 hrs
-2.1
+0.2
+0.0
-0.4
-0.1
nitrogen source
Inosine (N)
-0.9
-0.3
+0.1
-1.3
-0.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.4
-0.3
-0.4
-1.4
+0.3
stress
Lomefloxacin 0.0005 mM
-0.8
-1.4
-0.2
-0.1
+0.3
stress
Cholin acetate 20 mM
-1.2
+0.3
-0.0
-1.4
+0.2
phage
P5ss-5 phage 10-1 dilution SM calcl2
-1.8
+0.3
-0.1
-0.2
-0.1
carbon source
Carbon source Sucrose 10 mM
-1.4
+0.1
-0.0
-0.7
+0.0
carbon source
L-Lactate (C)
-2.2
-0.0
+0.3
+0.2
-0.0
stress
Nickel (II) chloride 0.625 mM
-0.8
+0.1
-0.2
-1.1
+0.3
pH
Minimal media pH9
-1.7
+0.2
+0.2
-0.1
-0.1
carbon source
Carbon source Sucrose 5 mM
-1.5
-0.1
+0.2
+0.4
-0.2
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-1.3
-0.2
-0.2
+0.5
+0.1
carbon source
m-Inositol (C)
-0.8
-0.6
-0.1
+0.7
-0.2
stress
methylglyoxal 0.016 vol%
+0.6
-0.1
+0.3
-1.3
-0.2
motility
outer cut, LB soft agar motility assay
-1.5
+0.3
-0.6
+1.1
+0.0
survival
4C survival; 24 hrs
-1.2
+0.3
-0.1
+0.7
-0.1
stress
copper (II) chloride 2.5 mM
+1.0
+0.3
-0.2
-0.6
-0.3
stress
KB-half, Pseudo5 supernatant
+0.8
-0.1
+1.1
-0.2
-0.2
stress
Paraquat dichloride 0.0625 mg/ml
+0.8
+0.6
-0.1
+0.6
-0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+1.9
-0.7
+1.7
+0.1
-0.2
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