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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_28605 and AO356_28610 are separated by 77 nucleotides
AO356_28610 and AO356_28615 are separated by 99 nucleotides
AO356_28615 and AO356_28620 are separated by 20 nucleotides
AO356_28620 and AO356_28625 are separated by 65 nucleotides
AO356_28605: AO356_28605 - N-ethylmaleimide reductase, at 6,648,684 to 6,649,778
_28605
AO356_28610: AO356_28610 - AraC family transcriptional regulator, at 6,649,856 to 6,650,644
_28610
AO356_28615: AO356_28615 - NADPH:quinone oxidoreductase, at 6,650,744 to 6,651,760
_28615
AO356_28620: AO356_28620 - gamma-glutamyltransferase, at 6,651,781 to 6,653,391
_28620
AO356_28625: AO356_28625 - ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA, at 6,653,457 to 6,654,236
_28625
Group
Condition
AO356
_28605
AO356
_28610
AO356
_28615
AO356
_28620
AO356
_28625
stress
Lomefloxacin 0.0005 mM
-0.1
-2.3
-0.7
+0.0
N.D.
stress
copper (II) chloride 2.5 mM
-0.1
-2.7
-0.1
-0.0
N.D.
nitrogen source
L-tyrosine (N)
+0.1
-1.9
-0.3
-0.2
N.D.
anaerobic
Nitrate reduction with yeast extract
-0.1
-1.8
+0.2
-0.6
N.D.
stress
Benzalkonium Chloride 0.008 mg/ml
-0.3
-1.1
-0.4
-0.3
N.D.
stress
Cisplatin 0.0032 mg/ml
-0.1
-1.2
-0.4
-0.4
N.D.
motility
outer cut, LB soft agar motility assay
-0.1
-1.0
-0.1
-0.7
N.D.
carbon source
Carbon source D-Mannitol 2.5 mM
+0.2
-1.7
-0.6
+0.4
N.D.
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
+0.2
-1.7
+0.1
-0.3
N.D.
stress
Thallium(I) acetate 0.008 mg/ml
-0.2
-0.9
-0.2
-0.4
N.D.
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.3
-0.8
-0.1
-0.5
N.D.
carbon source
L-Lysine (C)
-0.6
-0.9
-0.2
+0.2
N.D.
nitrogen source
D-Serine (N)
+0.1
-0.7
-0.6
-0.3
N.D.
carbon source
L-Malic (C)
-0.2
-0.8
-0.5
+0.1
N.D.
stress
Aluminum chloride 5 mM
-0.3
-0.8
+0.3
-0.3
N.D.
carbon source
D-Mannose (C)
+0.2
-1.0
-0.1
-0.2
N.D.
lb
LB
+0.2
-1.5
-0.1
+0.3
N.D.
nitrogen source
Carnitine Hydrochloride (N)
+0.4
-0.9
-0.2
-0.3
N.D.
stress
Vanillin 2.5 mM
+0.1
-1.2
+0.0
+0.3
N.D.
stress
Ceftazidime 0.2 mg/ml
+0.1
-1.1
+0.0
+0.3
N.D.
carbon source
Carbon source D,L-Lactate 10 mM
+0.4
-0.6
-0.4
+0.2
N.D.
stress
KB-half, Pseudo5 supernatant
-0.2
-0.6
+0.6
-0.3
N.D.
stress
Paraquat dichloride 0.0625 mg/ml
+0.4
-0.9
+0.5
-0.1
N.D.
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.7
+0.2
-0.0
-0.5
N.D.
carbon source
L-Lysine (C)
-0.1
+0.5
-0.3
+0.7
N.D.
stress
acetate 40 mM
-0.2
+0.6
+0.2
+0.5
N.D.
carbon source
L-Lactate (C)
-0.0
+0.9
+0.2
+0.4
N.D.
motility
outer cut, LB soft agar motility assay
+0.2
+0.4
+0.1
+0.8
N.D.
carbon source
D-Fructose (C)
+0.2
+0.6
+0.5
+0.2
N.D.
carbon source
D-Glucose (C)
+0.2
+0.5
+0.6
+0.4
N.D.
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