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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_28420 and AO356_28425 are separated by 33 nucleotides
AO356_28425 and AO356_28430 are separated by 114 nucleotides
AO356_28430 and AO356_28435 are separated by 153 nucleotides
AO356_28435 and AO356_28440 are separated by 15 nucleotides
AO356_28420: AO356_28420 - hypothetical protein, at 6,609,171 to 6,609,896
_28420
AO356_28425: AO356_28425 - hypothetical protein, at 6,609,930 to 6,610,556
_28425
AO356_28430: AO356_28430 - hypothetical protein, at 6,610,671 to 6,611,048
_28430
AO356_28435: AO356_28435 - SAM-dependent methyltransferase, at 6,611,202 to 6,611,897
_28435
AO356_28440: AO356_28440 - galactose 1-dehydrogenase, at 6,611,913 to 6,612,839
_28440
Group
Condition
AO356
_28420
AO356
_28425
AO356
_28430
AO356
_28435
AO356
_28440
stress
Sisomicin 0.001 mg/ml
-0.0
-0.5
+0.2
-2.2
-0.9
stress
KB-half, Pseudo5 supernatant
-0.5
-0.6
-1.3
+0.6
-1.5
survival
4C survival; 192 hrs
-0.4
-0.1
-0.9
-0.4
-1.2
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.8
-0.4
-0.1
-0.1
-1.5
carbon source
D-Galactose (C)
+0.1
-0.3
+0.0
-0.2
-2.0
carbon source
Carbon source D-Mannitol 10 mM
-0.6
-0.1
+0.3
-0.8
-0.9
pH
Minimal media pH9
+0.0
-0.6
+0.2
-0.5
-1.0
motility
outer cut, LB soft agar motility assay
-0.1
+0.3
-0.5
+0.9
-2.2
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.3
-0.2
-0.8
+0.3
-0.7
stress
Cephalothin 2 mg/ml
-0.2
+0.3
-0.8
+0.4
-0.9
carbon source
L-Lysine (C)
-0.5
-0.1
+0.5
-0.5
-0.5
motility
outer cut, LB soft agar motility assay
-0.3
-0.2
+0.7
-0.2
-0.6
nitrogen source
D-Serine (N)
-0.4
-0.1
-0.9
+0.7
+0.2
anaerobic
Nitrate reduction with yeast extract
-1.1
-0.2
+1.5
-1.4
+0.7
nitrogen source
Thymine (N)
-0.1
+0.1
+0.1
+0.7
-1.2
stress
Benzalkonium Chloride 0.008 mg/ml
-0.1
-0.4
-0.2
-0.7
+1.2
carbon source
L-Leucine (C)
-0.8
+0.1
-0.7
+0.4
+0.9
stress
Chloramphenicol 0.005 mg/ml
+0.0
-0.3
-0.3
-0.4
+1.0
stress
Lomefloxacin 0.0005 mM
+0.5
+0.1
-1.0
-0.4
+1.0
carbon source
L-Isoleucine (C)
-0.4
-0.0
-0.5
+0.3
+0.9
carbon source
Carnitine Hydrochloride (C)
-0.4
+0.1
-0.5
+0.8
+0.5
carbon source
Inosine (C)
-0.2
-0.1
-0.6
+0.4
+0.8
nitrogen source
L-Phenylalanine (N)
-0.3
-0.0
-0.7
+0.6
+0.9
nitrogen source
D-Alanine (N)
-0.3
+0.1
-0.4
+0.8
+0.6
carbon source
Putrescine (C)
-0.3
+0.1
-0.4
+1.2
+0.3
carbon source
D-Alanine (C)
-0.2
+0.0
-0.3
+0.5
+1.1
carbon source
L-Alanine (C)
-0.3
+0.3
-0.5
+0.7
+0.9
carbon source
Glycerol (C)
-0.1
+0.3
+0.9
-0.9
+0.9
nitrogen source
Carnitine Hydrochloride (N)
+0.0
-0.1
-0.3
+0.6
+1.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.1
+0.4
-0.2
-0.3
+1.8
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