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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_28405 and AO356_28410 are separated by 377 nucleotides
AO356_28410 and AO356_28415 are separated by 585 nucleotides
AO356_28415 and AO356_28420 are separated by 201 nucleotides
AO356_28420 and AO356_28425 are separated by 33 nucleotides
AO356_28405: AO356_28405 - NADH-dependent FMN reductase, at 6,605,833 to 6,606,396
_28405
AO356_28410: AO356_28410 - monooxygenase, at 6,606,774 to 6,608,018
_28410
AO356_28415: AO356_28415 - hypothetical protein, at 6,608,604 to 6,608,969
_28415
AO356_28420: AO356_28420 - hypothetical protein, at 6,609,171 to 6,609,896
_28420
AO356_28425: AO356_28425 - hypothetical protein, at 6,609,930 to 6,610,556
_28425
Group
Condition
AO356
_28405
AO356
_28410
AO356
_28415
AO356
_28420
AO356
_28425
carbon source
L-Lysine (C)
-1.0
+0.1
-0.1
-0.5
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.8
+0.2
-0.3
-0.2
-0.0
stress
KB-half, Pseudo5 supernatant
-0.1
+0.4
-0.3
-0.5
-0.6
carbon source
D,L-Lactate (C)
-0.9
-0.2
-0.1
-0.2
+0.3
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.5
+0.2
-0.4
+0.1
-0.3
lb
LB
-0.8
+0.2
-0.1
+0.1
-0.3
carbon source
D-Sorbitol (C)
+0.5
-0.1
-0.4
-0.4
-0.3
stress
Benzethonium chloride 0.025 mM
-0.7
-0.3
-0.2
+0.5
+0.0
anaerobic
Nitrate reduction with yeast extract
+0.2
-0.1
+0.5
-1.1
-0.2
stress
Bacitracin 2 mg/ml
-0.9
+0.2
+0.1
+0.2
-0.0
survival
4C survival; 1152 hrs
+0.5
+0.1
-0.8
-0.0
-0.3
nitrogen source
Gly-Glu (N)
+0.4
+0.2
-0.5
-0.5
-0.0
motility
outer cut, LB soft agar motility assay
+0.7
-0.5
+0.1
-0.3
-0.2
carbon source
L-Leucine (C)
+0.5
+0.3
-0.3
-0.8
+0.1
stress
Doxycycline hyclate 0.0001 mg/ml
-0.6
-0.1
+0.0
+0.2
+0.4
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.7
+0.2
+0.3
-0.8
-0.4
carbon source
Cytidine (C)
+0.5
+0.2
-0.3
-0.5
+0.2
stress
Nickel (II) chloride 0.625 mM
+0.2
-0.4
-0.2
+0.6
-0.1
stress
Choline chloride 500 mM
-0.6
+0.3
+0.1
+0.2
+0.2
stress
Chlorite 0.04 mM
-0.9
+0.5
+0.4
+0.1
+0.1
stress
Cisplatin 0.0032 mg/ml
+0.9
+0.1
-0.4
-0.1
-0.3
motility
outer cut, LB soft agar motility assay
-1.2
+0.5
+0.7
-0.1
+0.3
nitrogen source
Carnitine Hydrochloride (N)
+0.6
+0.3
-0.4
+0.0
-0.1
carbon source
L-Glutamic (C)
+0.7
-0.0
+0.3
-0.2
-0.2
carbon source
Carbon source Sucrose 10 mM
+0.2
-0.2
+0.5
-0.3
+0.3
nitrogen source
Putrescine (N)
+0.5
+0.3
-0.3
-0.1
+0.3
carbon source
L-Alanine (C)
+0.6
+0.3
+0.0
-0.3
+0.3
resistance
20 mM putrescine
+0.9
+0.3
+0.3
-0.1
-0.2
stress
Paraquat dichloride 0.0625 mg/ml
+1.0
-0.1
+0.5
-0.2
-0.1
nitrogen source
L-Isoleucine (N)
+0.5
+0.5
+0.2
-0.3
+0.3
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