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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_28375 and AO356_28380 are separated by 72 nucleotides
AO356_28380 and AO356_28385 are separated by 11 nucleotides
AO356_28385 and AO356_28390 are separated by 67 nucleotides
AO356_28390 and AO356_28395 are separated by 13 nucleotides
AO356_28375: AO356_28375 - ABC transporter permease, at 6,599,299 to 6,600,624
_28375
AO356_28380: AO356_28380 - ABC transporter permease, at 6,600,697 to 6,601,764
_28380
AO356_28385: AO356_28385 - ABC transporter permease, at 6,601,776 to 6,602,657
_28385
AO356_28390: AO356_28390 - ABC transporter ATP-binding protein, at 6,602,725 to 6,603,507
_28390
AO356_28395: AO356_28395 - long-chain fatty acid--CoA ligase, at 6,603,521 to 6,604,681
_28395
Group
Condition
AO356
_28375
AO356
_28380
AO356
_28385
AO356
_28390
AO356
_28395
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.4
-0.5
N.D.
N.D.
N.D.
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.5
-0.3
N.D.
N.D.
N.D.
carbon source
Carbon source D-Mannitol 10 mM
-0.0
-0.7
N.D.
N.D.
N.D.
nitrogen source
L-Isoleucine (N)
-0.1
-0.6
N.D.
N.D.
N.D.
stress
Sisomicin 0.001 mg/ml
+0.1
-0.8
N.D.
N.D.
N.D.
carbon source
Carbon source D-Mannitol 2.5 mM
-0.2
-0.4
N.D.
N.D.
N.D.
carbon source
D-Glucose (C)
-0.1
-0.4
N.D.
N.D.
N.D.
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.0
-0.5
N.D.
N.D.
N.D.
stress
Ceftazidime 0.2 mg/ml
-0.4
+0.1
N.D.
N.D.
N.D.
nitrogen source
Thymine (N)
+0.2
-0.4
N.D.
N.D.
N.D.
lb
LB
+0.3
-0.4
N.D.
N.D.
N.D.
resistance
20 mM putrescine
-0.3
+0.3
N.D.
N.D.
N.D.
nitrogen source
D-Alanine (N)
-0.3
+0.3
N.D.
N.D.
N.D.
stress
copper (II) chloride 2.5 mM
+0.4
-0.4
N.D.
N.D.
N.D.
resistance
10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.3
+0.3
N.D.
N.D.
N.D.
stress
methylglyoxal 0.016 vol%
-0.2
+0.3
N.D.
N.D.
N.D.
carbon source
Carbon source D,L-Lactate 10 mM
+0.3
-0.2
N.D.
N.D.
N.D.
carbon source
L-Lysine (C)
-0.2
+0.4
N.D.
N.D.
N.D.
carbon source
D-Sorbitol (C)
-0.1
+0.5
N.D.
N.D.
N.D.
carbon source
pyruvate (C)
-0.2
+0.5
N.D.
N.D.
N.D.
carbon source
Ethanol (C)
-0.1
+0.6
N.D.
N.D.
N.D.
carbon source
D-Xylose (C)
+0.1
+0.5
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
+0.1
+0.4
N.D.
N.D.
N.D.
motility
outer cut, LB soft agar motility assay
-0.1
+0.6
N.D.
N.D.
N.D.
stress
nitrate 200 mM
+0.2
+0.3
N.D.
N.D.
N.D.
carbon source
L-Arginine (C)
+0.1
+0.6
N.D.
N.D.
N.D.
motility
outer cut, LB soft agar motility assay
+0.2
+0.5
N.D.
N.D.
N.D.
carbon source
Ethanol (C)
+0.2
+0.6
N.D.
N.D.
N.D.
stress
Nalidixic 0.004 mg/ml
+0.3
+0.6
N.D.
N.D.
N.D.
stress
Chlorite 0.04 mM
+0.5
+0.4
N.D.
N.D.
N.D.
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