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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_28365 and AO356_28370 overlap by 9 nucleotides
AO356_28370 and AO356_28375 are separated by 56 nucleotides
AO356_28375 and AO356_28380 are separated by 72 nucleotides
AO356_28380 and AO356_28385 are separated by 11 nucleotides
AO356_28365: AO356_28365 - Fis family transcriptional regulator, at 6,597,350 to 6,598,453
_28365
AO356_28370: AO356_28370 - ABC transporter ATP-binding protein, at 6,598,445 to 6,599,242
_28370
AO356_28375: AO356_28375 - ABC transporter permease, at 6,599,299 to 6,600,624
_28375
AO356_28380: AO356_28380 - ABC transporter permease, at 6,600,697 to 6,601,764
_28380
AO356_28385: AO356_28385 - ABC transporter permease, at 6,601,776 to 6,602,657
_28385
Group
Condition
AO356
_28365
AO356
_28370
AO356
_28375
AO356
_28380
AO356
_28385
anaerobic
Nitrate reduction with yeast extract
+0.1
-2.0
-0.2
+0.1
N.D.
stress
KB-half, Pseudo5 supernatant
-0.5
-0.9
-0.3
-0.1
N.D.
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.0
-0.7
-0.4
-0.5
N.D.
carbon source
Carbon source Sucrose 5 mM
-1.0
+0.2
-0.1
-0.3
N.D.
carbon source
Carbon source D-Mannitol 2.5 mM
-0.4
-0.1
-0.2
-0.4
N.D.
carbon source
Carbon source D-Glucose 10 mM
-0.7
-0.3
+0.1
-0.2
N.D.
carbon source
L-Arginine (C)
-0.1
-1.0
+0.1
+0.0
N.D.
stress
Chlorite 0.08 mM
+0.4
-1.3
+0.2
-0.2
N.D.
motility
outer cut, LB soft agar motility assay
-0.6
-0.1
-0.2
+0.3
N.D.
carbon source
Carbon source D-Glucose 10 mM
-0.4
+0.3
-0.0
-0.4
N.D.
stress
Lomefloxacin 0.0005 mM
-0.4
-0.4
-0.1
+0.4
N.D.
nitrogen source
L-Isoleucine (N)
-0.1
+0.3
-0.1
-0.6
N.D.
stress
Sisomicin 0.001 mg/ml
+0.3
-0.2
+0.1
-0.8
N.D.
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-0.3
+0.4
-0.4
-0.1
N.D.
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
+0.3
-0.7
-0.1
+0.1
N.D.
resistance
10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.4
+0.3
-0.3
+0.3
N.D.
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.2
+0.5
-0.3
+0.1
N.D.
stress
1-ethyl-3-methylimidazolium acetate 10 mM
+0.1
+0.5
-0.0
-0.5
N.D.
carbon source
L-Arginine (C)
-0.4
-0.2
+0.1
+0.6
N.D.
motility
outer cut, LB soft agar motility assay
-0.3
-0.2
+0.2
+0.5
N.D.
carbon source
L-Leucine (C)
-0.4
+0.4
-0.1
+0.3
N.D.
carbon source
Ethanol (C)
-0.3
-0.1
+0.2
+0.6
N.D.
nitrogen source
Thymine (N)
+0.1
+0.5
+0.2
-0.4
N.D.
stress
nitrate 200 mM
-0.4
+0.5
+0.2
+0.3
N.D.
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.1
+1.6
-0.5
-0.3
N.D.
stress
Chlorite 0.04 mM
+0.1
-0.2
+0.5
+0.4
N.D.
stress
copper (II) chloride 2.5 mM
+0.2
+0.7
+0.4
-0.4
N.D.
motility
outer cut, LB soft agar motility assay
+0.3
+0.5
-0.1
+0.2
N.D.
stress
Cisplatin 0.0032 mg/ml
+0.2
+0.7
+0.1
-0.1
N.D.
motility
outer cut, LB soft agar motility assay
+0.0
+1.1
-0.1
+0.6
N.D.
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