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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_28220 and AO356_28225 are separated by 385 nucleotides
AO356_28225 and AO356_28230 are separated by 34 nucleotides
AO356_28230 and AO356_28235 are separated by 339 nucleotides
AO356_28235 and AO356_28240 are separated by 17 nucleotides
AO356_28220: AO356_28220 - non-ribosomal peptide synthetase, at 6,495,382 to 6,521,169
_28220
AO356_28225: AO356_28225 - ATP-binding protein, at 6,521,555 to 6,523,255
_28225
AO356_28230: AO356_28230 - syrP protein, at 6,523,290 to 6,524,351
_28230
AO356_28235: AO356_28235 - thioester reductase, at 6,524,691 to 6,526,538
_28235
AO356_28240: AO356_28240 - chemotaxis protein CheX, at 6,526,556 to 6,527,491
_28240
Group
Condition
AO356
_28220
AO356
_28225
AO356
_28230
AO356
_28235
AO356
_28240
motility
outer cut, LB soft agar motility assay
+0.2
-0.5
N.D.
-0.3
-0.6
stress
Chlorite 0.08 mM
-0.0
-0.2
N.D.
-0.5
-0.4
stress
Cephalothin 2 mg/ml
-0.1
-0.3
N.D.
-0.0
-0.6
stress
Choline chloride 300 mM
+0.0
+0.0
N.D.
-0.3
-0.7
carbon source
D,L-Lactate (C)
+0.0
-0.3
N.D.
-0.4
-0.3
survival
4C survival; 672 hrs
+0.3
-0.3
N.D.
-0.1
-0.9
lb
LB
+0.0
-0.1
N.D.
-0.1
-0.7
carbon source
D-Galactose (C)
+0.0
-0.5
N.D.
-0.1
-0.2
stress
Benzalkonium Chloride 0.016 mg/ml
+0.1
+0.2
N.D.
-0.3
-0.8
carbon source
Tween 20 (C)
-0.1
+0.1
N.D.
-0.1
-0.7
stress
perchlorate 75 mM
+0.2
-0.0
N.D.
-0.1
-0.7
lb
LB
-0.1
-0.2
N.D.
+0.2
-0.5
carbon source
L-Arabinose (C)
-0.0
-0.4
N.D.
-0.4
+0.1
stress
nitrite 10 mM
+0.0
-0.3
N.D.
+0.2
-0.5
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.0
+0.2
N.D.
+0.1
-0.8
stress
nitrate 200 mM
+0.2
+0.2
N.D.
-0.3
-0.4
carbon source
Carbon source D-Mannitol 2.5 mM
+0.1
+0.3
N.D.
-0.1
-0.5
survival
4C survival; 1152 hrs
+0.3
+0.3
N.D.
-0.4
-0.3
motility
outer cut, LB soft agar motility assay
+0.2
-0.2
N.D.
-0.6
+0.4
stress
Cisplatin 0.0032 mg/ml
-0.2
+0.1
N.D.
-0.3
+0.4
stress
Chlorite 0.04 mM
+0.2
+0.3
N.D.
-0.2
-0.2
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.2
-0.1
N.D.
+0.7
-0.1
nitrogen source
D-Serine (N)
+0.3
+0.3
N.D.
-0.0
-0.3
nitrogen source
nitrite (N)
+0.1
-0.3
N.D.
+0.0
+0.5
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.0
-0.3
N.D.
+1.3
-0.6
motility
outer cut, LB soft agar motility assay
-0.0
-0.4
N.D.
+0.1
+0.8
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.0
+0.1
N.D.
+0.1
+0.7
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-0.1
+0.1
N.D.
+0.3
+0.6
carbon source
Carbon source D-Mannitol 5 mM
+0.0
+0.3
N.D.
+0.3
+0.4
motility
outer cut, LB soft agar motility assay
-0.1
+0.4
N.D.
+0.5
+0.2
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