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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_28195 and AO356_28200 are separated by 85 nucleotides
AO356_28200 and AO356_28205 are separated by 2 nucleotides
AO356_28205 and AO356_28210 are separated by 78 nucleotides
AO356_28210 and AO356_28215 are separated by 331 nucleotides
AO356_28195: AO356_28195 - 2,4-diaminobutyrate 4-aminotransferase, at 6,443,092 to 6,444,432
_28195
AO356_28200: AO356_28200 - macrolide transporter, at 6,444,518 to 6,446,479
_28200
AO356_28205: AO356_28205 - hemolysin secretion protein D, at 6,446,482 to 6,447,633
_28205
AO356_28210: AO356_28210 - hypothetical protein, at 6,447,712 to 6,478,635
_28210
AO356_28215: AO356_28215 - hypothetical protein, at 6,478,967 to 6,492,142
_28215
Group
Condition
AO356
_28195
AO356
_28200
AO356
_28205
AO356
_28210
AO356
_28215
survival
4C survival; 360 hrs
N.D.
-4.0
-4.3
+0.2
+0.1
carbon source
Carnitine Hydrochloride (C)
N.D.
-2.8
-2.3
+0.1
+0.1
survival
4C survival; 192 hrs
N.D.
-2.1
-2.8
+0.1
-0.0
survival
4C survival; 672 hrs
N.D.
-2.9
-2.1
+0.2
+0.2
survival
4C survival; 1152 hrs
N.D.
-3.0
-2.0
+0.3
+0.1
nitrogen source
D-Serine (N)
N.D.
-2.9
-2.3
+0.4
+0.4
stress
nitrite 10 mM
N.D.
-1.9
-2.7
+0.1
+0.1
stress
Bacitracin 2 mg/ml
N.D.
-1.7
-1.8
+0.0
+0.1
nitrogen source
L-Phenylalanine (N)
N.D.
-1.4
-1.3
+0.0
+0.2
stress
perchlorate 75 mM
N.D.
-1.3
-1.3
+0.1
-0.0
stress
nitrate 200 mM
N.D.
-1.7
-1.4
+0.3
+0.3
stress
Paraquat dichloride 0.0625 mg/ml
N.D.
-1.6
-0.9
+0.1
+0.2
nitrogen source
Cytosine (N)
N.D.
-1.1
-1.1
+0.1
-0.0
stress
syringaldehyde 10 mM
N.D.
-1.0
-1.2
+0.1
+0.2
carbon source
D-Fructose (C)
N.D.
-1.1
-0.7
-0.0
+0.1
motility
outer cut, LB soft agar motility assay
N.D.
-0.6
-1.3
+0.2
+0.0
stress
Thallium(I) acetate 0.008 mg/ml
N.D.
-1.2
-0.8
+0.1
+0.2
motility
outer cut, LB soft agar motility assay
N.D.
-1.3
-0.6
+0.2
+0.0
stress
Paraquat dichloride 0.0625 mg/ml
N.D.
-0.8
-1.2
+0.1
+0.3
stress
Thallium(I) acetate 0.008 mg/ml
N.D.
-0.9
-0.6
+0.0
-0.1
stress
Nalidixic 0.004 mg/ml
N.D.
-0.9
-0.7
-0.0
+0.1
stress
Benzethonium chloride 0.025 mM
N.D.
-1.1
-0.5
+0.2
+0.1
carbon source
D-Fructose (C)
N.D.
-0.8
-0.4
-0.0
-0.1
nitrogen source
Gly-Glu (N)
N.D.
-0.8
-0.5
+0.1
-0.0
pH
Minimal media pH6
N.D.
-0.6
-0.6
+0.0
-0.1
motility
outer cut, LB soft agar motility assay
N.D.
-0.7
-0.7
+0.0
+0.2
stress
Aluminum chloride 5 mM
N.D.
-0.6
-0.3
+0.1
-0.2
carbon source
NAG (C)
N.D.
-0.5
-0.6
+0.0
+0.2
stress
Chlorite 0.04 mM
N.D.
-0.7
-0.2
+0.1
+0.2
stress
Lomefloxacin 0.0005 mM
N.D.
-0.8
-0.2
+0.1
+0.3
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