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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_28000 and AO356_28005 are separated by 113 nucleotides
AO356_28005 and AO356_28010 are separated by 383 nucleotides
AO356_28010 and AO356_28015 are separated by 283 nucleotides
AO356_28015 and AO356_28020 overlap by 17 nucleotides
AO356_28000: AO356_28000 - Rrf2 family transcriptional regulator, at 6,392,039 to 6,392,506
_28000
AO356_28005: AO356_28005 - malate:quinone oxidoreductase, at 6,392,620 to 6,394,263
_28005
AO356_28010: AO356_28010 - hypothetical protein, at 6,394,647 to 6,395,852
_28010
AO356_28015: AO356_28015 - histidine kinase, at 6,396,136 to 6,397,506
_28015
AO356_28020: AO356_28020 - ethanol oxidation regulatory protein ercA
(from data)
, at 6,397,490 to 6,398,668
_28020
Group
Condition
AO356
_28000
AO356
_28005
AO356
_28010
AO356
_28015
AO356
_28020
carbon source
Ethanol (C)
+0.3
-0.4
+0.1
-3.2
-4.4
carbon source
Ethanol (C)
-0.7
-0.2
+0.2
-2.7
-3.4
carbon source
Cytidine (C)
-0.5
-0.1
+0.0
-1.1
-1.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-1.4
-0.7
-0.1
-0.2
-0.3
carbon source
Inosine (C)
+0.0
-0.1
+0.1
-1.5
-1.1
carbon source
Uridine (C)
-0.2
-0.1
+0.1
-0.7
-1.4
stress
Thallium(I) acetate 0.008 mg/ml
-1.5
+0.5
-0.5
-0.3
-0.4
survival
4C survival; 1152 hrs
-0.3
-0.4
-0.2
-0.8
-0.1
stress
nitrite 10 mM
-1.3
+0.1
+0.3
-0.1
-0.7
carbon source
L-Lysine (C)
-1.6
-0.3
+0.3
-0.1
-0.0
carbon source
Carbon source Sucrose 2.5 mM
-0.2
-0.2
+0.1
-0.8
-0.7
carbon source
Carbon source Sucrose 2.5 mM
-0.2
-0.1
+0.0
-0.9
-0.5
stress
Benzalkonium Chloride 0.016 mg/ml
+0.7
-0.7
-0.2
-0.5
-0.4
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.8
+0.4
-0.1
-0.0
-0.5
stress
Sisomicin 0.001 mg/ml
+0.5
+0.1
-0.3
-0.4
-0.5
stress
KB-half, Pseudo5 supernatant
-1.0
+0.4
+0.1
-0.2
-0.0
carbon source
L-Isoleucine (C)
-1.4
-0.2
+0.0
+0.5
+0.4
nitrogen source
Gly-Glu (N)
-0.9
+0.0
+0.3
+0.3
-0.3
motility
outer cut, LB soft agar motility assay
+0.6
-0.6
+0.1
-0.6
+0.1
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.8
+0.1
-0.1
+0.4
+0.3
anaerobic
Nitrate reduction with yeast extract
+0.5
+0.0
-0.4
-0.6
+0.5
motility
outer cut, LB soft agar motility assay
+0.9
-0.1
-0.2
-0.6
+0.4
carbon source
L-Arabinose (C)
+0.8
-0.1
+0.0
-0.4
+0.5
carbon source
L-Histidine (C)
+0.0
-0.4
+0.0
+0.5
+0.8
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.6
+0.3
+0.1
+0.6
+0.6
nitrogen source
L-tyrosine (N)
-0.2
+0.2
+0.1
+0.6
+0.8
carbon source
L-Histidine (C)
+0.2
-0.0
+0.2
+0.7
+1.0
carbon source
L-Leucine (C)
-0.1
+0.0
+0.1
+1.0
+1.1
carbon source
D-Alanine (C)
+0.1
+0.1
+0.1
+1.6
+1.6
carbon source
Putrescine (C)
+0.4
+0.0
+0.3
+3.5
+3.7
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