Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_28000 and AO356_28005 are separated by 113 nucleotidesAO356_28005 and AO356_28010 are separated by 383 nucleotidesAO356_28010 and AO356_28015 are separated by 283 nucleotidesAO356_28015 and AO356_28020 overlap by 17 nucleotides AO356_28000: AO356_28000 - Rrf2 family transcriptional regulator, at 6,392,039 to 6,392,506 _28000 AO356_28005: AO356_28005 - malate:quinone oxidoreductase, at 6,392,620 to 6,394,263 _28005 AO356_28010: AO356_28010 - hypothetical protein, at 6,394,647 to 6,395,852 _28010 AO356_28015: AO356_28015 - histidine kinase, at 6,396,136 to 6,397,506 _28015 AO356_28020: AO356_28020 - ethanol oxidation regulatory protein ercA (from data), at 6,397,490 to 6,398,668 _28020
Group Condition AO356_28000 AO356_28005 AO356_28010 AO356_28015 AO356_28020
carbon source Ethanol (C) +0.3 -0.4 +0.1 -3.2 -4.4
carbon source Ethanol (C) -0.7 -0.2 +0.2 -2.7 -3.4
carbon source Cytidine (C) -0.5 -0.1 +0.0 -1.1 -1.1
stress 1-ethyl-3-methylimidazolium chloride 200 mM -1.4 -0.7 -0.1 -0.2 -0.3
carbon source Inosine (C) +0.0 -0.1 +0.1 -1.5 -1.1
carbon source Uridine (C) -0.2 -0.1 +0.1 -0.7 -1.4
stress Thallium(I) acetate 0.008 mg/ml -1.5 +0.5 -0.5 -0.3 -0.4
survival 4C survival; 1152 hrs -0.3 -0.4 -0.2 -0.8 -0.1
stress nitrite 10 mM -1.3 +0.1 +0.3 -0.1 -0.7
carbon source L-Lysine (C) -1.6 -0.3 +0.3 -0.1 -0.0
carbon source Carbon source Sucrose 2.5 mM -0.2 -0.2 +0.1 -0.8 -0.7
carbon source Carbon source Sucrose 2.5 mM -0.2 -0.1 +0.0 -0.9 -0.5
stress Benzalkonium Chloride 0.016 mg/ml +0.7 -0.7 -0.2 -0.5 -0.4
phage P5ss-5 phage 10-1 dilution SM calcl2 -0.8 +0.4 -0.1 -0.0 -0.5
stress Sisomicin 0.001 mg/ml +0.5 +0.1 -0.3 -0.4 -0.5
stress KB-half, Pseudo5 supernatant -1.0 +0.4 +0.1 -0.2 -0.0
carbon source L-Isoleucine (C) -1.4 -0.2 +0.0 +0.5 +0.4
nitrogen source Gly-Glu (N) -0.9 +0.0 +0.3 +0.3 -0.3
motility outer cut, LB soft agar motility assay +0.6 -0.6 +0.1 -0.6 +0.1
resistance 10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine -0.8 +0.1 -0.1 +0.4 +0.3
anaerobic Nitrate reduction with yeast extract +0.5 +0.0 -0.4 -0.6 +0.5
motility outer cut, LB soft agar motility assay +0.9 -0.1 -0.2 -0.6 +0.4
carbon source L-Arabinose (C) +0.8 -0.1 +0.0 -0.4 +0.5
carbon source L-Histidine (C) +0.0 -0.4 +0.0 +0.5 +0.8
resistance 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine -0.6 +0.3 +0.1 +0.6 +0.6
nitrogen source L-tyrosine (N) -0.2 +0.2 +0.1 +0.6 +0.8
carbon source L-Histidine (C) +0.2 -0.0 +0.2 +0.7 +1.0
carbon source L-Leucine (C) -0.1 +0.0 +0.1 +1.0 +1.1
carbon source D-Alanine (C) +0.1 +0.1 +0.1 +1.6 +1.6
carbon source Putrescine (C) +0.4 +0.0 +0.3 +3.5 +3.7
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