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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_27965 and AO356_27970 are separated by 285 nucleotides
AO356_27970 and AO356_27975 are separated by 671 nucleotides
AO356_27975 and AO356_27980 are separated by 5 nucleotides
AO356_27980 and AO356_27985 are separated by 254 nucleotides
AO356_27965: AO356_27965 - benzaldehyde dehydrogenase, at 6,383,392 to 6,384,864
_27965
AO356_27970: AO356_27970 - Fis family transcriptional regulator, at 6,385,150 to 6,386,925
_27970
AO356_27975: AO356_27975 - hypothetical protein, at 6,387,597 to 6,387,923
_27975
AO356_27980: AO356_27980 - AraC family transcriptional regulator, at 6,387,929 to 6,388,849
_27980
AO356_27985: AO356_27985 - sorbitol dehydrogenase, at 6,389,104 to 6,389,877
_27985
Group
Condition
AO356
_27965
AO356
_27970
AO356
_27975
AO356
_27980
AO356
_27985
stress
nitrate 200 mM
-1.3
-0.2
N.D.
-0.2
-0.6
stress
Nalidixic 0.004 mg/ml
-0.9
+0.0
N.D.
-0.8
-0.3
motility
outer cut, LB soft agar motility assay
-1.0
-0.2
N.D.
-0.2
-0.5
stress
nitrite 10 mM
-1.3
-0.4
N.D.
+0.0
+0.3
carbon source
D-Trehalose (C)
-1.1
+0.2
N.D.
-0.0
-0.1
pH
Minimal media pH6
-0.7
-0.6
N.D.
+0.2
+0.0
carbon source
L-Lysine (C)
-1.4
+0.2
N.D.
+0.4
-0.2
carbon source
Carbon source D-Mannitol 10 mM
-1.2
+0.2
N.D.
-0.1
+0.2
lb
LB
-0.4
+0.2
N.D.
+0.2
-0.8
motility
outer cut, LB soft agar motility assay
+1.0
-0.1
N.D.
-1.2
-0.4
carbon source
L-Histidine (C)
-1.1
+0.3
N.D.
+0.5
-0.4
stress
Aluminum chloride 5 mM
-1.0
+0.2
N.D.
+0.2
-0.1
anaerobic
Nitrate reduction with yeast extract
-0.1
-1.1
N.D.
+0.4
+0.2
stress
Chlorite 0.04 mM
-0.7
+0.2
N.D.
-0.2
+0.3
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.6
-0.2
N.D.
-0.3
-0.5
stress
Benzalkonium Chloride 0.008 mg/ml
-0.9
+0.1
N.D.
+0.0
+0.4
motility
outer cut, LB soft agar motility assay
+1.0
-0.1
N.D.
-1.2
+0.0
motility
outer cut, LB soft agar motility assay
+0.1
+0.1
N.D.
-0.8
+0.6
temperature
LB 30C
-0.5
-0.3
N.D.
+0.1
+0.8
stress
Cobalt chloride 0.08 mM
+0.8
+0.2
N.D.
+0.1
-0.7
carbon source
L-Histidine (C)
-0.7
+0.1
N.D.
+0.7
+0.3
carbon source
D-Alanine (C)
+1.0
-0.2
N.D.
-0.3
+0.1
nitrogen source
Cytosine (N)
+1.1
-0.1
N.D.
-0.1
-0.3
stress
KB-half, Pseudo5 supernatant
-1.0
-0.5
N.D.
+1.3
+0.9
carbon source
Carnitine Hydrochloride (C)
+0.8
-0.0
N.D.
+0.4
-0.3
nitrogen source
nitrite (N)
+0.9
-0.0
N.D.
-0.3
+0.4
stress
Thallium(I) acetate 0.008 mg/ml
-0.4
+0.4
N.D.
+0.7
+0.4
pH
Minimal media pH6
+0.8
-0.2
N.D.
+0.2
+0.4
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.8
-0.4
N.D.
+1.5
+1.0
stress
copper (II) chloride 2.5 mM
+1.1
+0.3
N.D.
+0.4
+0.4
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