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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_27955 and AO356_27960 are separated by 90 nucleotides
AO356_27960 and AO356_27965 are separated by 71 nucleotides
AO356_27965 and AO356_27970 are separated by 285 nucleotides
AO356_27970 and AO356_27975 are separated by 671 nucleotides
AO356_27955: AO356_27955 - hypothetical protein, at 6,380,813 to 6,382,462
_27955
AO356_27960: AO356_27960 - 3-alpha-hydroxysteroid dehydrogenase, at 6,382,553 to 6,383,320
_27960
AO356_27965: AO356_27965 - benzaldehyde dehydrogenase, at 6,383,392 to 6,384,864
_27965
AO356_27970: AO356_27970 - Fis family transcriptional regulator, at 6,385,150 to 6,386,925
_27970
AO356_27975: AO356_27975 - hypothetical protein, at 6,387,597 to 6,387,923
_27975
Group
Condition
AO356
_27955
AO356
_27960
AO356
_27965
AO356
_27970
AO356
_27975
anaerobic
Nitrate reduction with yeast extract
-0.0
-0.8
-0.1
-1.1
N.D.
stress
nitrite 10 mM
-0.3
+0.0
-1.3
-0.4
N.D.
stress
KB-half, Pseudo5 supernatant
-0.1
+0.0
-1.0
-0.5
N.D.
stress
nitrate 200 mM
+0.1
-0.1
-1.3
-0.2
N.D.
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.1
-0.3
-0.8
-0.4
N.D.
stress
acetate 40 mM
-0.0
-0.4
-1.1
+0.1
N.D.
stress
1-ethyl-3-methylimidazolium acetate 10 mM
+0.0
-0.5
-0.7
-0.1
N.D.
motility
outer cut, LB soft agar motility assay
-0.4
+0.3
-1.0
-0.2
N.D.
pH
Minimal media pH6
+0.1
+0.0
-0.7
-0.6
N.D.
pH
Minimal media pH9
-0.1
-0.3
-0.8
+0.0
N.D.
carbon source
D-Trehalose (C)
+0.0
-0.2
-1.1
+0.2
N.D.
carbon source
L-Lysine (C)
-0.0
+0.2
-1.4
+0.2
N.D.
carbon source
L-Histidine (C)
+0.1
-0.2
-1.1
+0.3
N.D.
carbon source
Carbon source D-Mannitol 10 mM
+0.2
-0.2
-1.2
+0.2
N.D.
pH
Minimal media pH7
+0.1
-0.2
-0.9
+0.1
N.D.
stress
Aluminum chloride 5 mM
-0.1
+0.1
-1.0
+0.2
N.D.
temperature
LB 30C
+0.2
+0.2
-0.5
-0.3
N.D.
nitrogen source
Carnitine Hydrochloride (N)
-0.1
-0.6
+0.6
-0.1
N.D.
survival
4C survival; 360 hrs
+0.1
-0.3
+0.4
-0.4
N.D.
stress
Chlorite 0.04 mM
+0.2
+0.2
-0.7
+0.2
N.D.
stress
Cisplatin 0.0032 mg/ml
+0.3
+0.4
-0.9
+0.2
N.D.
carbon source
D-Alanine (C)
-0.2
-0.2
+1.0
-0.2
N.D.
nitrogen source
Cytosine (N)
-0.1
-0.2
+1.1
-0.1
N.D.
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.0
-0.1
+1.0
-0.2
N.D.
pH
Minimal media pH6
+0.2
+0.1
+0.8
-0.2
N.D.
motility
outer cut, LB soft agar motility assay
+0.5
-0.5
+1.0
-0.1
N.D.
stress
Cobalt chloride 0.08 mM
+0.2
-0.1
+0.8
+0.2
N.D.
motility
outer cut, LB soft agar motility assay
+0.2
-0.0
+1.0
-0.1
N.D.
carbon source
L-Asparagine (C)
+0.2
+0.2
+0.6
+0.2
N.D.
stress
copper (II) chloride 2.5 mM
-0.1
+0.1
+1.1
+0.3
N.D.
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AO356_27965
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